LOCUS       XM_002729838            4971 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to dystonin (LOC680875),
            transcript variant X1, mRNA.
ACCESSION   XM_002729838
VERSION     XM_002729838.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_002729838.7.
            
            On Jan 21, 2021 this sequence version replaced XM_002729838.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4971
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4971
                     /gene="LOC680875"
                     /note="similar to dystonin; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:680875"
                     /db_xref="RGD:1587008"
     CDS             2503..4821
                     /gene="LOC680875"
                     /codon_start=1
                     /product="uncharacterized protein LOC680875 isoform X1"
                     /protein_id="XP_002729884.2"
                     /db_xref="GeneID:680875"
                     /db_xref="RGD:1587008"
                     /translation="MGNPASRLSCLGGRRSRSRFSPRTHRSPRTQGDLSPSEAPQGTL
                     PPGIPWTWWGSRGVQVTEVTETVVVTETVVTEAVEMGPCKHRGQPVQVFLAPLDTLCS
                     WLDGMEELQASQGPLAADATLAASQLREQELLLRLLRERAPHMEPRLREAGSPSELCT
                     QWHRLVQQAETRWKLLEQLVPAAQSFETACKALLLQLSPTEQLLAELRLRPKCLEESW
                     PYLQEVCEGVVARARDLERVLQTGQRLAELLTSDQAQLVRQQLKQFQERVKLTESQIA
                     CAQQKLLFTQRTESSKPSPPAGLEAQHELEGSASIHPGLKDLKQLSVQLVQLAERLEK
                     LAQWAETSSQAAAPTVTIWEQSLSSATLRADVKALEGHWLETQDAGLKAIWEPAVQTL
                     CGLAEEAATEKLRPESDWNSGFQEFLWGQQTLAVSWLGRRGDTAYGSACHLGLRMDLQ
                     GCRAAMSRPSCERIYTLEGMLLLVAHLVEKFVLCPQRLSQAEPLGTKVVQAQSWVLEE
                     LPGAQTPKYWTQAPREILALRSLDQGPPGDLGSRAKACLLGKIPEELSWRPWWAEVME
                     NWNHRKPEHSKRNQEERDEWEQLEQGHQEQDLMESFLAAGEQGNIGQGWPGCNWGRCG
                     PHHKFSTTFEPGLSSAQKQPSSVVRARNTEGTSTPVARGRPKVQGALIARGAMMVRVG
                     GGWAALDEFLVKNDPVRAKGRTSQKIHERFLCWTPSVPAPEVITLRLWTSIRMGSSRP
                     QSPKTGLPIGKEHRDPSSYKVKTSEQPTEEKL"
ORIGIN      
        1 cgagcttaac agtgctgggt aaagcaaacc aacacacgcg tgtctttagc aaagaatagt
       61 gaggcggatc aaaccaaaca aggctcagtg ctcgtccccc actgtctgta gggtcatttt
      121 tacagtcctt catcaagcat cctttacgcg tttgctactt ccaaacatcc tttcacctgc
      181 gtctacttcg ggaaaacagt ctttcacgtg tttgttttag caaggcatcc tttcaggtgt
      241 atgccccagc aaaccattga agaactagaa gtttccacct cagtgggatg ctgtgttctt
      301 agtgtgaatg tacaaggcag ggtcctttaa aaggataagg atattcaaag aaaggggccc
      361 atgtgaggac ccagggcagt gactaggaga ggctcctagt tacacgcccg tgggcttttg
      421 tgagccagct gtccttgctt ggatggtcag gagtgggatc agaacagctc ctttctggcc
      481 acgcactact caccagccgt aattcaggaa cctcacgtat aaaggaggtc atatggccac
      541 taagtactgg actctatgaa gtgtggctat cacagccttt gactctgagt agagttaaca
      601 gggccagaga gggtcctgat atggaggata ttctataccc ttgttcagga ggtccaagct
      661 caacatagga ccttgacctt ggaaaaggga gaaagatgga ggttggcacc aaataggcat
      721 tagcacccct ccggacctga gcctctacta ttccagtcat ggtcaacaag agggagactt
      781 gtacagaaag ttgacctggt tctgccttgg gcagcaaaac aaaccagaag caagatgtta
      841 aaggtagggg ctaccctagt ccctcttagc tacagagaga cccagtgcag gagggagaag
      901 ggcgttccag actaagcagc ccatcaaggg taaggcccag agactggatg gggcagctgt
      961 tcttaggaac tcctcggtcc cttaaaggag aagggggtga ggtttgcagg ccaggtatgg
     1021 acaggtttgt gctgggacac acccctccag cccactgaag gttcccccag gaatgtacct
     1081 acttggtgct tggcctgggg tgggggctga gaaaagagag caggtagaat agggtgggcc
     1141 gtcctagggt gtgaggcaga caagctctct tgggagaggc gtccaccagc catccaccca
     1201 cagtgcgtct gcggcctgcc ctggcctgtc agcctgccca cctcacccaa acattttcca
     1261 tggaaagttc ccaaggcaac agcaacacaa acgcatgaca aagataaacg aggcaggggc
     1321 aggcctcagc ctgggtggca gaggtggtgg tggtggtcac aggcttgagg tgggtggatg
     1381 gggcagggct agctttagtc tcccaagtca tctctgtcag cagtgaggga aggcctggga
     1441 ccagcatggc cctcaagaga gggctttgta gcttctctgt tgagtacaca ttccactcct
     1501 tgatatgatg gatcagtggt ggtcaggtaa aggggaatgg atgcggtcat gctggcaccc
     1561 atggtccatg aatacagcat tttggatgga ggcccccttg gcatccatcc cctcctgctc
     1621 tcttctacct agtggggatg ccaggttaga ggaagggatt tcatgccagg ctcaggtggg
     1681 agactgtgtg gcaagtctga ggttcctgga agcagagcag accagtctag ggtgccagga
     1741 agccttgggt gggggttgtc tgagtcccgt ggagtggcca tgtgactggg aaagggtgta
     1801 gtccaggact ccctgggggc cacatagctg tgggaaattc ccatgactct ccaatccctc
     1861 ctaaagtatg tgtggatgtc cccccaaccc cccccccccg gttccctata gttcctagtc
     1921 atccccaggg caaacctggc acccattata gcagctccct ttctttgacc tcctaaccca
     1981 aagggatctc agccctatgg ccatgtgagt ggcctgtttg ggtcttgggt gggaagtgaa
     2041 ctccaccacc accaccacca ctacacacac acacacacac acacacacac acacacacac
     2101 acacacacac acacacacac aggaactgtg gggggagggg ccagaaactc cagctagaag
     2161 ccccttcccc cttgcagccc ttcccccacc cacatgtctg aggatgggca ctgggtttcc
     2221 caggaaactg gaggaagaaa agtgctgggg ccagactgtc tggggctggt ggagcagtgg
     2281 cttgagggac ggtaggatgc ccagggctag acagaggtga gagctcttct ctccagtccc
     2341 ctaagccagg gcagctaccc aatgccagga agtttctttg gcaccagtct gtgaaagcct
     2401 gtgggcctcc cggttctgat ttggatcctc tgcctttgta agggctgttc ttgccgtgta
     2461 agggctgttc ttgccgtccc ggcaatctgc tcggcatcta ggatgggaaa ccctgcttca
     2521 aggctcagtt gccttggggg gaggaggagc cgctcacgct tcagccctag gactcacagg
     2581 agccccagga cccaagggga tctctctcca tccgaagctc ctcagggcac acttccacca
     2641 gggatcccct ggacctggtg gggctcccgt ggtgtccagg tgacagaggt cacagagacg
     2701 gtggtggtga cagagacagt agtgacagag gctgtggaga tggggccctg caagcataga
     2761 gggcagccag tccaggtctt tctagcaccc ctggacacac tgtgcagctg gctggatggc
     2821 atggaggaac tgcaggcttc acaaggaccc ctggctgcag atgccacctt ggctgcttcc
     2881 cagttgcggg aacaggagct gctcctacgg ctgctgaggg agcgtgcacc acacatggag
     2941 ccaagattac gagaggcagg gagcccgtca gagctgtgca cacaatggca ccggctggta
     3001 caacaagcag aaaccaggtg gaagctcttg gaacagctcg tgccagcagc acagagcttt
     3061 gaaacagcct gcaaggctct gctgctgcag ctgagcccga ctgaacagct actggctgag
     3121 ctgcggctgc ggcccaagtg ccttgaggag tcatggccgt acctccagga ggtgtgtgag
     3181 ggagtggtgg cacgcgccag ggacctggaa agggttttac agactggcca gaggctggca
     3241 gagcttctca ctagtgacca agctcagctt gtgcgacagc agctgaagca attccaggag
     3301 cgtgtaaagc tgactgagtc acaaatcgcc tgtgcccagc aaaagctgct gtttactcaa
     3361 aggacagagt cctccaagcc ctcaccacca gcaggcctgg aggcccagca tgaactggaa
     3421 gggtctgctt caatacatcc agggctcaag gatctgaagc agctgagtgt ccagctggtt
     3481 cagttagcag agcggcttga gaagctggca cagtgggcag agacttctag tcaggcagca
     3541 gcacccacag tgaccatctg ggaacagagc ctctcatcag ccacgcttcg ggcagatgtg
     3601 aaggccctgg aagggcactg gttagagact caagacgctg ggctgaaagc catatgggag
     3661 ccagctgtgc agaccttgtg tggcctggca gaggaggcag ccactgagaa actgaggcct
     3721 gagagtgact ggaactcagg tttccaggag ttcctgtggg gacagcaaac cctggcagtg
     3781 tcatggctag gaaggagagg agacacggcc tatgggagcg cctgccactt gggacttcgg
     3841 atggacctgc agggctgccg ggctgccatg tctcgcccct cctgtgagag gatatacacc
     3901 ctggaaggga tgctgctgct tgtcgctcac cttgtagaga agttcgtgtt gtgcccccaa
     3961 aggctgagcc aggccgaacc cttggggacc aaggtggtac aagcccaaag ctgggtgcta
     4021 gaggagctgc ctggggctca gaccccaaag tactggactc aagccccaag ggagatactg
     4081 gctttgagga gtcttgacca gggtccgcct ggggatctgg ggagtagagc taaagcttgc
     4141 ctcctgggga agattccaga agaactgagc tggaggccat ggtgggcaga ggtcatggag
     4201 aactggaatc acaggaagcc agagcatagc aagaggaacc aggaggagag ggacgagtgg
     4261 gaacagctgg agcagggcca ccaggaacag gacctcatgg agagcttcct ggcagctgga
     4321 gagcagggca acattggaca aggctggcct ggctgtaact ggggaagatg tggacctcac
     4381 cacaagttct ccaccacatt cgagccgggg ctctccagtg cccagaaaca gcccagtagc
     4441 gtggtcagag caaggaacac agaagggaca agtacaccag tggccagagg caggcccaag
     4501 gtccagggag ccttgatagc acgaggagcc atgatggttc gtgttggagg tggttgggca
     4561 gctctggatg aatttctggt aaaaaatgac ccagtcagag caaagggaag aaccagccag
     4621 aagatccacg aaaggttcct atgctggact cctagtgtgc cagcccctga ggtcatcacc
     4681 ctgaggctct ggacctccat ccgaatgggc tctagcagac cccagtctcc gaagacaggg
     4741 ctgccaattg gcaaggaaca cagagatccc agctcctaca aggtcaaaac ctcagagcag
     4801 cctactgagg agaagctgtg aagactccaa gatccagcag ataggaacag gaagctgtgg
     4861 tagagcatgc tcagcgaggg actgagcagg agctggtagc acacagtccc cgcacagagt
     4921 ggggttgtgt ctctcgctct cagcaataaa gaggagtttg gggaactgaa a
//
