LOCUS       XM_039089978            1769 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus hypothetical protein LOC680825
            (LOC680825), mRNA.
ACCESSION   XM_039089978
VERSION     XM_039089978.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089978.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-186               JACYVU010000225.1  3841686-3841871     c
            187-929             JACYVU010000225.1  3833502-3834244     c
            930-1012            JACYVU010000225.1  3832717-3832799     c
            1013-1164           JACYVU010000225.1  3827099-3827250     c
            1165-1165           "N"                1-1
            1166-1222           JACYVU010000225.1  3827042-3827098     c
            1223-1769           JACYVU010000225.1  3823456-3824002     c
FEATURES             Location/Qualifiers
     source          1..1769
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1769
                     /gene="LOC680825"
                     /note="hypothetical protein LOC680825; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins, and 56% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:680825"
                     /db_xref="RGD:1587058"
     CDS             130..1755
                     /gene="LOC680825"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: NXPE family member 3-like"
                     /protein_id="XP_038945906.1"
                     /db_xref="GeneID:680825"
                     /db_xref="RGD:1587058"
                     /translation="MRQFKGYKILIVGLIFLVLVFCLMMPWPEPMILWLEQPRPVSED
                     ASETIDWDSLSQELPNLTNLLYWPPSGGDRDDFLASTSPRTSTYHLKGPAQANYTLGS
                     NLEAILVARDHWGRPKAHGGDLFRAQLLGPELRAGVPGEVKDLENGTYLLSFPLLWAG
                     WAQVQVRLIHSSEAVGVLQRVWREKRATVDFRGHFRGTNGTQETVICNVDPQSTGAKG
                     STCQYKDVVSGEIWFCAQPCTLPCNALVGHSSGSYLKVTTPHDEDLLAGYVTDQKLPS
                     GIPPILVLQAAQENMENTALPSRPPCHPGHLSPKPSGFYHQDRWHSTFCSSRSFPTVE
                     SILNCLSGRIVXMGDSTLRQWWEYLRDTVPSLKPVDLHATYQVGPLMAVETTRGTVLH
                     WRAHSWPLRSLRTPVASLHSVARELHGLAGGPYTVVVLGMGAHFTTFPPSIFARRLAG
                     IRAAVKALLDREPSTLVVIKLANTGYKSVYGSDWLTLQMNRFLRAAFVGLRVAFVDAW
                     EMTSSLAVPDDIHPRKLIVRNEVELFLSFICPT"
ORIGIN      
        1 ctgaaactgg agcgaacata gtgaatcagc tcctctgttt tgggaaggcc tgttaaactt
       61 atggccctgt gtggattacc tagatttgca tgaaaattca aggggaagct tcgttgtgtg
      121 gatctcctca tgaggcaatt caagggctac aagattctga ttgtgggctt gatctttctg
      181 gttttggtgt tctgcctcat gatgccttgg cctgagccca tgatactttg gctcgaacaa
      241 ccccgtcctg tctctgaaga tgcctcagag accatcgact gggactctct ttctcaagaa
      301 ctccccaact tgaccaacct tctatactgg cctccaagcg ggggagatag ggatgacttt
      361 ctggcctcta ccagccccag aacctctacc taccacttga aaggacctgc ccaggccaac
      421 tatactctgg gaagtaacct agaggccatc cttgtggcta gggatcactg gggtaggccc
      481 aaagctcatg gtggagatct gtttcgggca cagctgctgg gtccagaatt gagagcagga
      541 gtcccagggg aggtgaagga tctggagaat gggacttacc tcttgtcctt ccccctgctc
      601 tgggctggat gggcccaggt gcaagtgcga ctgatccact ccagtgaggc agttggggtc
      661 ctgcaaagag tctggagaga aaaacgagcc actgttgatt ttagagggca tttccgagga
      721 acaaacggca ctcaagagac tgtcatctgt aacgtggacc cccagtcaac tggagccaaa
      781 gggtctacct gccaatacaa ggatgtggtt tctggggaga tctggttctg tgctcaaccc
      841 tgtactttgc cttgcaatgc tttagtgggt cactcgagtg gaagttatct gaaggtgacc
      901 acgccacatg atgaagacct gctggctggg tatgtaactg accagaaact cccttcaggc
      961 atacctccaa tcctagtcct acaagcagcc caggagaaca tggaaaacac ggccctgccc
     1021 tcaaggcccc catgtcaccc tggccacctg tctccaaaac cctctggctt ctaccaccaa
     1081 gacagatggc attcgacatt ctgttctagc cgctctttcc ccactgtgga gagcatcctg
     1141 aactgcctgt caggacgcat tgtcntaatg ggggattcca cactccggca gtggtgggag
     1201 tatcttcgag acacagtgcc ctccctgaag ccagttgacc tacatgccac ttatcaagta
     1261 ggtcccctga tggccgtgga gacaactcgg gggacggtgt tgcactggag ggcacacagc
     1321 tggcccctgc gttctctccg caccccagtg gcctccctgc actctgtggc cagagaacta
     1381 catggcctgg ccgggggacc ctacacagtg gtggtgctgg gtatgggagc ccactttacc
     1441 acgttccctc cctccatctt tgctcgaaga ctggcaggga ttcgggcagc tgtgaaggcc
     1501 ctgctggacc gggaacccag tactctggtc gtcatcaaac tggccaacac tggctacaaa
     1561 tcggtgtatg gcagtgactg gctcacactc cagatgaacc gcttcctccg cgctgccttt
     1621 gttggtctcc gcgtggcctt tgtggatgcg tgggaaatga cctccagctt ggctgtgcca
     1681 gacgacatcc acccaaggaa gcttattgtc cgcaatgaag tggaattatt tctgtccttc
     1741 atctgtccca cctgagtgct cctgaggga
//
