LOCUS       XM_039111228             714 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to ribosomal protein L10a
            (LOC680700), mRNA.
ACCESSION   XM_039111228
VERSION     XM_039111228.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111228.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..714
                     /gene="LOC680700"
                     /note="similar to ribosomal protein L10a; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 long SRA reads, 33 Proteins, and 95% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:680700"
                     /db_xref="RGD:1588266"
     CDS             33..689
                     /gene="LOC680700"
                     /codon_start=1
                     /product="60S ribosomal protein L10a-like"
                     /protein_id="XP_038967156.1"
                     /db_xref="GeneID:680700"
                     /db_xref="RGD:1588266"
                     /translation="MSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQK
                     DKRFSGTVKLKSTPRPKFSVCVLGDQQHCDEVKAVDIPHMDIEALKKLNKNKKLVKML
                     AKKYDYDAFLVSESLIKQIPRILSPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQM
                     KKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY
                     "
ORIGIN      
        1 tcgcttcttt tccggttccc gcagccgcag ccatgagcaa agtttcacgc gacaccctct
       61 acgaggcggt gcgggaagtc ctgcacggga accagcgtaa gcgccgcaag tttctggaga
      121 cggtggagct gcagatcagc ctgaagaact acgaccctca gaaggacaaa cgcttctcgg
      181 gcaccgtcaa gcttaagtcc acccctcgcc ccaagttctc cgtgtgcgtc ctgggggacc
      241 agcagcactg tgatgaagtc aaggccgtgg atatccccca catggacatc gaggcgctca
      301 agaagcttaa caagaacaag aagttggtca aaatgctggc caagaagtat gattatgatg
      361 cctttttggt ctctgagtct ctgatcaagc aaatcccacg tatcctgagc ccaggcctaa
      421 acaaggcagg caagttcccc tccctgctga cacacaatga aaacatggtg gccaaagtgg
      481 atgaggtgaa atccacaatc aagttccaga tgaagaaggt actgtgtctg gccgttgccg
      541 tcggccacgt gaagatgacc gatgacgagc tagtctacaa catccacctg gctgtcaact
      601 tcttagtgtc cttactcaag aaaaactggc agaacgtccg ggctctgtac atcaagagca
      661 ccatgggcaa gccccagcgt ctgtattagg atgctccaat aaaccttggt gctg
//
