LOCUS       XM_039109039            1508 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Sjogren syndrome antigen B
            (LOC680385), mRNA.
ACCESSION   XM_039109039
VERSION     XM_039109039.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109039.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1508
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1508
                     /gene="LOC680385"
                     /note="similar to Sjogren syndrome antigen B; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 3 long SRA reads, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:680385"
                     /db_xref="RGD:1592944"
     CDS             80..1288
                     /gene="LOC680385"
                     /codon_start=1
                     /product="lupus La protein homolog"
                     /protein_id="XP_038964967.1"
                     /db_xref="GeneID:680385"
                     /db_xref="RGD:1592944"
                     /translation="MAENGDNEKMAALEAKICHQIEYYFGDFNLPQDKFLKEQIKLDE
                     GWVSLETMIKFNRLNRLTTDFNVIVQALSKSKAKLMEVSADKTKIRRSPSRPLPEVMD
                     EYKNDVKNRSVYIKGFPTDATLDDIKEWLDDKGQILNIQMRRKLHKTFKGSIFAVFDS
                     IQSAKKFVDTPGQKYKDTNLLILFKEDYFAKKNEERKQSKVEAKLKAKQEHEGRHKPG
                     STETRALEGKMGCLLKFSGDLDDQTCREDLHFLFSNHGEIKWIDFVRGAKEGIILFKE
                     KAKDTLEKARSANNGNLLLRNKKMTWKVLEGHAEKDAMKKITDDQQESLNKWKSKGGH
                     VRRFKGRGKGNRPAYAGAPKGRGQFQGRRTRFDDDDHRRGPMKRGRDGRDREEPASEH
                     KKRENGARDK"
ORIGIN      
        1 gcttctgtcg ttgttcgtga agccgtggtg actgcgggat cagaatcttt gagtgtgaga
       61 aactttacag atagccacaa tggctgaaaa tggagataac gaaaaaatgg ctgctctgga
      121 ggccaaaatc tgtcatcaaa ttgagtatta ttttggagac ttcaatttgc cacaagacaa
      181 gtttttaaaa gaacagatca aattggatga aggctgggta tctttggaaa caatgataaa
      241 attcaacagg ctaaaccgac tgacaacaga ctttaatgta atcgtgcaag cattgagcaa
      301 atctaaggca aaactcatgg aagtgagtgc agacaaaact aaaattagaa gatcaccaag
      361 cagaccactc cctgaagtga tggatgagta taagaatgat gtgaaaaata gatctgttta
      421 tattaaaggc ttcccaactg atgccaccct tgatgatata aaagaatggc tagatgataa
      481 aggccaaata ctgaatattc agatgagaag aaaattgcac aaaacattta aggggtcaat
      541 atttgccgtg tttgatagta ttcagtctgc aaagaagttt gtggacaccc ccggccagaa
      601 gtacaaagac actaatctgc taatactctt caaggaagat tactttgcaa aaaaaaatga
      661 agaaagaaag cagagcaaag tggaagctaa attaaaagct aaacaagaac atgaaggaag
      721 acacaaacca ggaagtactg aaacaagagc tctagaagga aaaatgggat gcttactgaa
      781 gttttcaggt gacttggatg accagacctg tagagaagat ttacacttcc ttttctcaaa
      841 tcatggtgaa ataaaatgga ttgactttgt cagaggagca aaagagggaa taattctctt
      901 caaagaaaag gctaaggaca cacttgagaa agccagaagt gcaaataatg gtaacctact
      961 gttaaggaac aaaaagatga cttggaaagt actagaagga catgcagaaa aagatgcaat
     1021 gaaaaaaatc acagatgatc aacaagaatc tctgaacaaa tggaagtcaa aaggaggtca
     1081 tgttcgcaga tttaaaggaa gagggaaggg taatagacct gcttatgctg gggcacccaa
     1141 aggaagagga cagtttcaag gaaggaggac aagatttgat gatgatgatc atcgtcgtgg
     1201 accaatgaaa agaggaagag acggaagaga cagagaagaa cccgcatcag agcataagaa
     1261 aagagagaat ggtgctagag acaagtagtt tatttagtaa gcagtgtttt tattccttag
     1321 ttaggtttta agctgctttt tgtcttcaga agcttttaaa aagaaaagcg aattaggtcc
     1381 acttcaatgt ccacctgtat aaaaggaaaa gttttttgtt ttacttgtct ttttgttgtt
     1441 atccaaatga aagtttttta aaatgtatag ttctgtttgt gtttggatga ttaaaatatg
     1501 aaaaggaa
//
