LOCUS       XM_039088763            2104 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to heat shock protein 8
            (LOC680121), mRNA.
ACCESSION   XM_039088763
VERSION     XM_039088763.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039088763.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2104
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2104
                     /gene="LOC680121"
                     /note="similar to heat shock protein 8; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 153 ESTs, 123 long SRA reads, 174 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments"
                     /db_xref="GeneID:680121"
                     /db_xref="RGD:1595502"
     CDS             77..2017
                     /gene="LOC680121"
                     /codon_start=1
                     /product="heat shock cognate 71 kDa protein-like"
                     /protein_id="XP_038944691.1"
                     /db_xref="GeneID:680121"
                     /db_xref="RGD:1595502"
                     /translation="MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNCTTPSYVAF
                     TDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPK
                     VQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKD
                     AGTIAGLNVLRIINEPTAAAIAYVLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFE
                     VKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSS
                     STQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDI
                     VLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLL
                     LLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMT
                     KDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKG
                     RLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDED
                     KQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPGGMPGG
                     FPGGGAPPSGGASSGPTIEEVD"
ORIGIN      
        1 ttgaacgcgg agccagctct cggggatctc tgtgtggtct cgtcatcagc acagctgggc
       61 ctacacgcaa gcaaccatgt ctaagggacc tgcagttggc attgatcttg gcaccaccta
      121 ctcctgtgtg ggtgtcttcc agcatggaaa ggtggaaata attgccaatg accagggtaa
      181 ctgcaccacg ccgagctatg ttgctttcac cgacacagaa cgattaattg gggatgcggc
      241 caagaatcag gttgcaatga accccaccaa cacagttttt gatgccaaac gtctgatcgg
      301 acgtaggttc gatgatgctg ttgttcagtc tgacatgaag cactggccct tcatggtggt
      361 gaacgatgca ggcaggccca aggtccaagt cgaatacaaa ggggagacaa aaagtttcta
      421 tcctgaggaa gtgtcttcaa tggttctgac aaaaatgaag gaaattgcag aagcttacct
      481 tggaaagact gttaccaatg ccgtggtcac cgtgccagct tacttcaatg actctcagcg
      541 acaggcaaca aaagatgctg gaactattgc tggcctcaac gtacttcgaa ttatcaatga
      601 gccaactgct gctgctattg cctatgtctt agataagaag gtcggggctg aaaggaatgt
      661 gctcattttt gacttgggag gtggcacttt tgatgtgtca atcctcacta tcgaggatgg
      721 aatttttgaa gtcaaatcaa cagctggaga cacccacttg ggcggagaag actttgacaa
      781 ccgaatggtc aaccatttca ttgctgagtt taagcgaaag cacaagaagg acatcagtga
      841 gaacaagaga gctgtcaggc gtctccgcac tgcctgtgag cgggccaagc gcaccctctc
      901 ctccagcacc caggccagta ttgagattga ttctctctat gagggaattg acttctacac
      961 ctccattacc cgtgctcgat ttgaggagtt gaatgctgac ctgttccgtg gcacactgga
     1021 ccctgtagag aaggcccttc gagatgccaa actagacaag tcacagatcc atgatattgt
     1081 cctggtgggt ggttctacca gaatccccaa gatccagaaa cttctgcaag acttcttcaa
     1141 tggaaaagag ctgaataaga gcattaaccc cgatgaagct gttgcctatg gtgcagctgt
     1201 ccaggcagcc attctatctg gagacaagtc tgagaatgtt caggatttgc tgctcttgga
     1261 tgtcactcct ctttcccttg ggattgaaac tgctggtgga gtcatgactg tcctcatcaa
     1321 gcgcaatacc accattccca ccaagcagac ccagactttc accacctact ctgacaacca
     1381 gccaggtgta ctcatccagg tgtatgaagg tgaaagggcc atgaccaagg acaacaacct
     1441 gcttgggaag tttgagctca caggcatacc tccagcaccc cgtggggttc ctcagattga
     1501 ggttactttt gacattgatg ccaatggcat cctcaatgtt tctgctgtag ataagagcac
     1561 aggaaaggag aacaagatca ccatcaccaa tgacaagggc cgcttgagta aggaggatat
     1621 tgagcgcatg gtccaagaag ctgagaagta caaagctgag gatgagaagc agagagataa
     1681 ggtttcctct aagaactcgc tggagtctta tgctttcaac atgaaagcaa ctgttgagga
     1741 tgagaaactt caaggcaaga tcaatgatga agacaaacag aagattcttg acaagtgcaa
     1801 cgaaatcatc agctggctgg ataagaacca gactgcggag aaggaagaat ttgagcatca
     1861 gcagaaagaa ctggagaagg tctgcaaccc tatcatcacc aagctgtacc agagtgctgg
     1921 tggcatgcct ggaggaatgc ctggtggctt ccctggtgga ggagctcctc catctggtgg
     1981 tgcttcttca ggccccacca ttgaagaggt cgattaagtc aaagtagagg gtatagcatt
     2041 gttccacagg gacccaaaac aagtaacatg gaataataaa actatttaaa ttggcaaaaa
     2101 aaaa
//
