LOCUS       XM_039101062            2653 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to putative pheromone receptor
            (Go-VN3) (LOC679574), mRNA.
ACCESSION   XM_039101062
VERSION     XM_039101062.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101062.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2653
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2653
                     /gene="LOC679574"
                     /note="similar to putative pheromone receptor (Go-VN3);
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 21 Proteins, and 54% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:679574"
                     /db_xref="RGD:1587109"
     CDS             4..2547
                     /gene="LOC679574"
                     /codon_start=1
                     /product="vomeronasal type-2 receptor 116-like"
                     /protein_id="XP_038956990.1"
                     /db_xref="GeneID:679574"
                     /db_xref="RGD:1587109"
                     /translation="MFTFLFALLVLELSFLLCSQIDNHCFWRLKTKKFWDGDKDIDCF
                     FFIYTKFGHVKNEQFSGDLDKRLTTKNIHLILTLYFALEEINMNPHILPNISLLVKIE
                     CSLLDDWRINSLSSKREEYLPNYYCKNQRRYLIVLTGPMWLPSVIVGPLLYISKRPEL
                     YFGPFHPLLSSQELYPYLYQMTPKDTSLALAMVSLIVHFNWNWVGAVVSDDDPGYEFI
                     LELRREMQMNSVCLAFVSVIVSDDILFVKRYNIYYNQITMSSAKVVIIYGDKESPLQL
                     NFRLWHLIDIQRIWVTTSQWDMIINNGKFLLLSSYGTLTFSHHYPELSGFKTFIQTAY
                     PSNYSDDISLARLWWIYFNCSLSFSNCKNLQTCSKEKIFRWLYRHHFEMSLSDTTYDL
                     YNSVYAVAHTLQQMLLQQADSLQIDDGKELQFDPWQMVSFLKNVQFINPAGDKVNLNH
                     KEKLDTEYDIHQTMDFLPNPVFKLKIGTFSQNLPHGPQLYMLKEIIEWNTGHQQSPTS
                     ICSIPCSPGFRKSPQQGKPVCCFDCTPCPENEISNMTNMNQCIKCLNDQYANPGGTHC
                     FKKVIVFLGYEDPLGMSMAILALCFSVLTAFVLGIFLKHQGTPIVKANNRTLSYVLLT
                     SLISCFLCPLLFIGHPNFVTCIMQQATFAVVFTVAASTVLAKTIIVVLAFKITNSSRK
                     MRWLLVSGAPKFIIPICTMIQLILCGIWLGTSPPFVDTDGYVEKGHILIFCNKGSILA
                     FYCVLGYLGSIAIGSFTLAFLARNLPDTFNEAKFLTFSMLVFCSVWITFLPVYHSTKG
                     KSMVAVEVFCILASSAGLLICIFAPKCFIIMLRPEKKSFQKFQNIHSKI"
ORIGIN      
        1 aagatgttca cttttctgtt tgcacttctt gtcctggagc tttcttttct tttgtgcagt
       61 caaattgaca accattgttt ttggagatta aaaaccaaga aattttggga tggagacaaa
      121 gatattgatt gctttttttt tatttataca aaatttggac atgtaaagaa tgaacagttc
      181 agtggggatc tagacaagcg gttgacaact aagaatatcc atttgatttt gactctttat
      241 tttgcccttg aagaaataaa catgaacccc catattctac ctaacatttc actgctagtt
      301 aaaattgaat gtagtctgct ggatgattgg agaataaaca gcttatcttc taaaagagaa
      361 gaatatcttc ctaactacta ctgtaaaaat cagagaagat atttaattgt acttacagga
      421 ccaatgtggt taccatctgt catagttggg ccactcctat atatttctaa gaggccagag
      481 ctttacttcg ggccatttca ccctctcttg agcagccaag aactgtatcc gtatctttat
      541 cagatgactc ctaaggacac atctctggca ctggccatgg tttctttgat tgtccatttc
      601 aactggaact gggtgggagc agttgtttca gatgatgacc caggttatga atttatcttg
      661 gaattgagaa gagaaatgca aatgaacagt gtgtgtttag cctttgtgag tgtcattgtt
      721 agcgatgaca tattatttgt gaaaaggtat aatatctatt acaaccagat cacgatgtca
      781 tcagcaaaag ttgtaatcat ttatggagac aaagagtctc ctctacagtt gaactttaga
      841 ctatggcatt taatagatat ccaaagaatc tgggtcacta cctcacagtg ggatatgatc
      901 ataaataatg gaaaattcct cctcctttcc tcctatggga ctctcacttt ttcacatcac
      961 tatcctgaat tatctggttt taaaacattt atccagacag catacccttc aaactacagt
     1021 gatgacattt cccttgctag attatggtgg atatatttta attgttcttt gtcattttct
     1081 aattgtaaga atcttcaaac ttgttcaaag gaaaaaatat ttagatggtt atacaggcac
     1141 cattttgaaa tgtctttgag tgatactact tatgacctat ataattctgt gtatgctgtg
     1201 gctcacacac tccaacaaat gcttctgcaa caagcagata gcctgcaaat agatgatgga
     1261 aaagaactgc aatttgaccc ttggcagatg gtctccttcc tgaaaaatgt ccaatttata
     1321 aaccctgctg gagacaaagt gaacctgaat cacaaggaaa aactggatac agagtatgac
     1381 attcaccaga ctatggattt tttgccaaat cctgtattta agctgaaaat tggaacattt
     1441 tcccaaaatc tgccacatgg tccacaatta tatatgttga aagaaataat agagtggaac
     1501 acaggccatc aacagtctcc aacctcaatt tgcagtattc cttgcagtcc aggattcaga
     1561 aaatcccctc agcagggaaa gcctgtgtgc tgttttgatt gtacaccctg cccagagaat
     1621 gaaatttcca acatgacaaa catgaatcaa tgtatcaagt gtctaaatga tcagtatgcc
     1681 aatcctggag gaactcactg cttcaaaaaa gttattgtat tcctgggtta tgaagatcca
     1741 ttgggaatgt ctatggctat cttggctctg tgcttctctg ttctcacagc ttttgttctt
     1801 ggtatctttt tgaagcacca aggaacaccc attgtcaagg ccaataacag aactctcagc
     1861 tatgttctac tcacctccct catctcttgt tttctatgtc ccttgctctt cattggtcat
     1921 cccaactttg tcacatgtat catgcagcag gccacatttg ctgttgtgtt cactgtagct
     1981 gcatctactg tcttggcaaa gacaattatt gtagtattgg ccttcaagat tactaattca
     2041 agtagaaaaa tgaggtggct gctggtatca ggggcaccta aattcatcat tccaatttgc
     2101 acaatgattc aactgattct ctgtggaatt tggctgggta cttctcctcc atttgttgat
     2161 actgatggat atgttgaaaa aggccacatt ttgattttct gtaacaaagg ttcaattctt
     2221 gctttctatt gtgtcctggg atacttaggc tccattgcca ttggaagttt cacccttgca
     2281 ttcttagcca ggaatctgcc tgacacattc aatgaagcca agttcctgac attcagcatg
     2341 ctagtatttt gcagtgtctg gatcaccttt cttcctgtct atcacagcac caagggcaag
     2401 tctatggtgg ctgtggaagt tttctgtata ttggcatcta gtgcagggct tcttatttgc
     2461 atctttgcac caaagtgctt cattattatg ttaaggcctg agaaaaaatc ttttcagaag
     2521 tttcagaata tacattctaa aatttaaaac attcattaaa tttttctgac acatttgcta
     2581 taccaaactt attcacaagt ctccactgac actcctagtt gtaatcaaat tttaggtaaa
     2641 aaacatgtaa ttt
//
