LOCUS       XM_003751324            1720 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to ubiquitin-conjugating
            enzyme E2 variant 1 (LOC679539), mRNA.
ACCESSION   XM_003751324
VERSION     XM_003751324.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_003751324.6.
            
            On Jan 21, 2021 this sequence version replaced XM_003751324.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1720
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1720
                     /gene="LOC679539"
                     /note="similar to ubiquitin-conjugating enzyme E2 variant
                     1; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 61 ESTs, 25 long SRA reads, 35 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments"
                     /db_xref="GeneID:679539"
                     /db_xref="RGD:1587144"
     CDS             8..451
                     /gene="LOC679539"
                     /codon_start=1
                     /product="ubiquitin-conjugating enzyme E2 variant 1"
                     /protein_id="XP_003751372.1"
                     /db_xref="GeneID:679539"
                     /db_xref="RGD:1587144"
                     /translation="MAATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMT
                     LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPSVRFVTRVNMSGVSSSNGVVDP
                     RATAVLAKWQNSHSIKVILQELRRLMMSKENMKLPQPPEGQCYSN"
ORIGIN      
        1 acgcaagatg gcagccacca caggctcggg agtaaaagtc cctcgaaatt tccgactgtt
       61 ggaagagctg gaagaaggcc agaaaggagt aggcgacggc acagttagct ggggtctgga
      121 ggacgacgag gacatgacgc tcacaagatg gacaggcatg ataattgggc ctccacgaac
      181 aatttatgaa aaccgaatat acagccttaa gatagagtgt gggcctaagt atccagaagc
      241 acccccgtct gtgagatttg taacaagagt caatatgagt ggcgtgagca gttccaatgg
      301 agtggtggat ccacgagcca cagcagtgct ggcaaagtgg cagaattccc acagcatcaa
      361 agtcatcctg caggaactga ggcgcttgat gatgtcaaaa gagaacatga agctgccaca
      421 gccaccagaa ggacagtgtt acagcaatta gtcaccaagg ccccggcctc ccttccccat
      481 ccaacccaag tcttcatttt ccacagtagt gaatttttct agatccatct gtagacctca
      541 aagtactgga gaggaagccc cactcagact tcatcctgag acactgctct gatactaact
      601 tcttgtccat ttgaaaatcc taagttgtgc tgtgtaacat catctgtcga gtgtaaccgc
      661 tgtctgcctg gttgaacttc tgggatcaag aaggtgtgtt gaaatcggtt tcctttggga
      721 gcggtgggca cagctaacgc aactgtgaac agacacgtct cacacaatca cctgctgctg
      781 gcactcggcc tgggtctgcc tttgcccgcc ctgccctccg ccatagctgt gtggtggccc
      841 ttagaataga tggggaggct tcaggtagca gccgtgggac tgaccaccgc tgggcttggg
      901 gcgctttggc tgcacccctg ctttcttaag tcttaagtga ttgccccatc caagccatgg
      961 tccccactcc tccactccca cccttggcca aagcttagat tgtaatctcc cttccctctg
     1021 aaattggccg tgggtgagga attcagggct tcccgtctcc ccacctttat caaggggtgc
     1081 tgctttcccc tcctcgagtc ccttgttgcc cgtcaccacc caacacttgc tgtggccaga
     1141 agccaccaga tgaggttgga agagcctggc ctccctcact tagctccgga ccacactcgt
     1201 tcacctgcca ccagcctggg aagggagcgc cgggtcctcg gccctgccac caccatcagc
     1261 ccttgagctt tgagctcagg tctagaggtg aacagagcag tcaccgggcg actcagacgg
     1321 gccagcgctc agggtccttg gatatatgcc tagagaaagg ccatgcggag agtcctcggt
     1381 gcacatggtt ctgagttggt tccttttccc ataattgctt tgcttttaca cattgaagag
     1441 gtttgaacag ggctctcagt caccctgacc acccatcggg tctggtgtgg agcctgacag
     1501 ctggagcagg aagccctgac cctgcagact cgggtttcag tgttgttcct cagaccctcg
     1561 gcagggaccc agaggagctc tgtgtcacca cgttcgcaga tttttgcaga tcggtgggcc
     1621 tggctcctgg ctcattgcca cgctccccac tctgttcagg accactaaat gttgaaatgt
     1681 ggatgcatac tgaaataaag gcaattcgtt gtgttgcaaa
//
