LOCUS       XM_039103643            9107 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to GTPase activating protein
            testicular GAP1 (LOC678817), transcript variant X1, mRNA.
ACCESSION   XM_039103643
VERSION     XM_039103643.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103643.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9107
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..9107
                     /gene="LOC678817"
                     /note="similar to GTPase activating protein testicular
                     GAP1; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:678817"
                     /db_xref="RGD:1595598"
     CDS             3590..7702
                     /gene="LOC678817"
                     /codon_start=1
                     /product="uncharacterized protein LOC678817 isoform X1"
                     /protein_id="XP_038959571.1"
                     /db_xref="GeneID:678817"
                     /db_xref="RGD:1595598"
                     /translation="METIESEEVGGVQQHVVCQGPVILKRGWKSNKRYLILLNNLLIV
                     SNRQKRKKFKIKHVIPLTHLWLGDEVDIFRTDNSSASRSIYLYWPMGNAVATFRSMEQ
                     TIWWYFFLQRSIREVKKQNKIDLSMQILTEDIACSDTPLYVPATNFDTGNDIISKLLP
                     MMTKHNIEDYQLWFCPGHGKAPRPLQGHEYPHDIMMINVQKNFRPQELRNFTSINSLP
                     QLFKKYLTSDAQGQFILKPRDSERILQEKNINGKTLKKPKTSITSWWHRYSVRHQDQV
                     CSSPRVNKGGKLFGRELSSICHDNKLPSAILDMLSLLKRKGPTTKGVFTVSPSVTLRQ
                     TVKDKLDSDEEVDMNKQSVHVVAWIFKDFLQNIEGSLMTSKLYDEWISVTEKINEEEK
                     LAAVQSLLEKLPTANAALLGQLFQILFEVKSNSSVNGMSSYQLSCGIAPCLLFMPSSC
                     NNGGTNDIAKKISLTTFMIENARKLFGEDLVEVWYETSLFHPPGEKSSRSQNTATNTS
                     TMKEVERGHSSCPSGKTCTHGYDALPRSAADHHPYEGITDSEKHKGSSIYASPPVPYQ
                     NLPHPKKKCYFGKSLTSIFEDKKMSGLIIDMLSIIAEKGQDSDDIFKIIPENSHYSLR
                     NRIDNKQYINWNQENVIIIASVLTDFIRSIDGSLLTSDLYENWLSVLDEGTVIEKVIA
                     IQSLLLKIPTENLILLNHLISVLAIIKDSSMNNLDSDKLALRIAPYLLRDETTRNSPF
                     LQDISRKTLLIQVMIDNYLLIFGNDKTYLKKTDKRVDGLKTSTHSIKSAEKSPIMKEA
                     IGGHNEKSWNDEKLNISHAPLKKGGSTDSEKQQGSSVYASPPGPSINPPQTTKKCLFG
                     KTLRSIFEDEKVSGLIFDMMSIIAEKGQDSDDIFKIIPENSHWSLRNKIDSEQYINWN
                     QESVIIIASVLMNFIRSIDGSLLTSDLYENWFSVLDEGTVIEKVIAIQSLLVKIPPEN
                     LTLLYHLISVLAIIKDSSMNNLDSDRLALRIAPYLLRDETTRNSPFLQDISRKMSIIQ
                     IMIDNYLLIFGNYPTYGKHIDKRSDGLKTSTDSIKFADKSPIIEEFIVGINGKSCDND
                     ENFNISYAALKKEGPTDSEKQQGSSVCASPPGPPINPPQTTKKCLFGKTLRSIFEDKK
                     VSGLILDMLSIIAKKGQESDDLFKIVHENSHFSLRNRIDSEQCIDWNVESVLDIASVF
                     KDFIKNIDGSLLTSDLYENWLSVMDEGTVAGRITAIQRLLLRIPQENFSVLNHLISVL
                     VIIKDSSMNNLNSKRLSIRIAPYALWDRTRRGSLFGSDMSIKISLMQIMIDNYIPIFE
                     NYNKYCSDGLKTSADFINSSGKSPIMKEVIGDHNGKTCDDEEFDISYTIL"
ORIGIN      
        1 cttccaaggg aatgttttct ggaattcttc tataactaag taatgagaga agattatatt
       61 ctggactatc taattgcttt acctactata accacagaat tttattgtaa tcttgtaaga
      121 cttcaaccta aaatctatga aatctctgat tttcagcaaa ttgttattat ttccaatata
      181 tacattgtat tctttaaaac atcactcaat aatttatatc aattttgatt agaaaagaat
      241 aaagttccaa acatgattat ttacttctaa tattccttac catgaaacta cattggtact
      301 attttgaaaa ctatttttat attattttta atgtgtgtga tgactaacat tgatggatgt
      361 ttctttttga ttttttttga tggttaggaa tcttaaagta tttctatgta tatgctggtg
      421 tctttgtaca tatttcttga aagataaaac atgctttggg catagtgata ttcacatacc
      481 aaatatatac atgaaatatt caaatcatat gagtagggaa ggaacagtaa aaaaaattta
      541 aaaagagaat ttactccatt attatcagaa agaatgttat ttggagaaaa aaatgttcag
      601 agacatctgg aagtgttcag agagaaaaag aaacagactt ggtatgacca agactgttgg
      661 gtacagaata gagaatatca gagtggaaaa atggtaatgc cagaagaaaa acactgcctc
      721 cataaagagg aggaaattct agaattttct tctgcattgc tttactttac aacactgtaa
      781 tgtatttatg caaaatcaga gttatacagc acacaatgtc catgaaaaac gtttttgatt
      841 gatagagttg tgctatctta attacttctg tgtaattaca catatcagtg aaaatacagt
      901 ttgcaaaagg cataatttat tactttcagt caaattcctt cactttaaac cataagcctt
      961 ctaagtttac attatctttc tatgaatata atgtataaaa tgcatactat gttaattatg
     1021 aggagtacag attaaatacc aggttgtttc attctgcatg ttttatgtct ctagggttta
     1081 ctataaaaat tttacggtat actcataagc gtgtatcctt tattgtaggc ctcagagtta
     1141 ggatatgtgt atatatatat atccaaaggg tagaaggaga tgatatgcat gtgtcacatt
     1201 gtcagataga ccatgagatc tctactctta tatcataaaa tactgtcagc ctgactggta
     1261 cagagtcctc agacttcagt acttggtcta ctaagtgctg taagtagttt gttattcagt
     1321 gtctgaaatg aaaagaaaaa ttcacatcca ttgaacattc tccattccac atctcattgt
     1381 aaagttaatt tcgataacaa atttgattct catgattgac taataaatag tattaggaag
     1441 tggtctgtct tgatttgttc agatcatgtg aagtaactct caattcactc gtgtcttgag
     1501 aagctattta tgttaggaat attccctaac aattccttac agaaagagag ttatcatgtt
     1561 gggagaagaa tgagttgacc taaacaggaa aaaggtttct gtaaacattc aaaaatatct
     1621 gtccaggtta gaagtgagaa ttttttatgc tcaatccagt tttttgtgca ccatgattac
     1681 aaggattttt ttgtaacagc tcagactgca acctaaaata taagaactcc cttgatttct
     1741 gcatattgtt ttcctcaaaa tttaacatta tcatgattag acaggaacaa cactccatgc
     1801 atcatttgct tccatatttg ttaaacatgg aactgaattg ttcctatttt tttttaccat
     1861 aactttacat tattgttgtg tgcatatgag gactgcaatt ggctgctgtc tctctttgac
     1921 tctgatactt ggggagacta agggctttct aactaaaaca catggtgtct ctcgacattt
     1981 cttgaaagaa gtaacatacg attcaattaa aattttattc acttaagtaa atgtacattt
     2041 aagtattcaa atagtgtgtg taagacacag tagagaaact gtcaaatgag tagtcaatat
     2101 attaatagaa ggaaagctat gataattgac gagagagcac aaatatacag agctcagggc
     2161 agagagaaaa acaactttat gtgaccgagt ctgtctagta gagaagggag aaaatcatga
     2221 gaaaaattga aagtagctgg gccagaataa agttcgcctt catgaggaat aatgttctag
     2281 aacgttttga gagtttccat gctgtagaat agacaggaag gtatggaaag ggaaagatat
     2341 ctagatggaa gattgagtct agcatttaga catctaaaat ctttgagaaa taactagtta
     2401 aataattaac taaaaactat attccccaca tttatttatg taatgtataa atggtaattt
     2461 gtggcatgta aatacataga tttctttgtg atattctctt atgtaacata cttcaaatta
     2521 tcagtcattt aaaatcagaa ttaagtagca gcaaatcttt acaaagaaat ttaatttgat
     2581 agaattttgc tcttaataag tactgaatta ttacaaatac cagttaaacc atatagtttg
     2641 cagattgaat aatttattgc tatcatcaca attttaacta tttaaaagga tggttacagt
     2701 tccttggtac actaattaca caattaattc tgagatttat agaatatgtc ccaggttgtt
     2761 tcaatcacat ttctttgtct ctaggcttta ctctataaag tttactttat aataataact
     2821 gggtgtcctc aaagctgtct ggctttggtg tgtgatgatt tctgagtcta tgtcagtaaa
     2881 gcccattcta tgttaaagtt ccttgtgagt ttgtttctat tcagctctga gttttacagt
     2941 gttaatgaag tttccatagt acctttttca catggaacct tgacagactg aaaaaataag
     3001 aattcacaat ctttgtggta gcatatgcat ttcacaatat ttacaccaat attcctctta
     3061 ttatacatat atcttcatct atctatctat ctatctatct atctatctat ctatctatct
     3121 atctatctat ctatctatcg atctatgtat ctgtcttcta tctcatttat atcacacagc
     3181 tatatctaca tcttcatgta tactgatagt tgtgaaaatg tcattcatta caaacaattg
     3241 tgcttccacc tatgttcaaa aataatgttt taaagccaca gggagagaaa ataaactgca
     3301 catgccactc ttgcccaatg gcatgagcct tagaatcttg acatcacaat gtccttcagc
     3361 ctgacaacta cagaatcctc cgacttcagt agcttactgg ccactgaagg caccagttcg
     3421 gtgtttagag gcaggaaggc gaacgaaaat ttcactttct ttgataagtt cttcactgca
     3481 ggctctacga aaaagaatga gcagggccca gtaaagaaaa caacaaaaca gaaagccact
     3541 gcattattac aggtggtgat ctttatcagg agaattcatt tttttcaaca tggaaactat
     3601 tgagtcagaa gaggtgggag gagtacagca acacgtggtt tgccaaggcc ccgtgatact
     3661 taaaagaggc tggaaaagta ataaacgata tcttatcttg ctcaataatc ttttgattgt
     3721 gtctaataga cagaaaagga aaaagtttaa gataaaacat gtcattccat tgactcacct
     3781 gtggcttggt gatgaagtgg acatattcag gacagacaac agctctgctt ccaggtccat
     3841 ttacctatac tggccaatgg gaaatgctgt ggcaaccttt cgttccatgg aacagactat
     3901 ttggtggtac ttctttttac aaagatccat tcgtgaagtc aagaagcaga acaaaataga
     3961 tctgtccatg cagatactca ccgaagacat tgcatgctct gacactcctc tatatgtacc
     4021 agcaacaaac ttcgatacgg ggaatgacat aatcagcaag ttactaccaa tgatgacaaa
     4081 acataacatt gaagattatc agctgtggtt ctgccctggc catgggaaag ctccaagacc
     4141 actccaaggg catgagtatc cacatgacat tatgatgata aatgttcaaa agaacttccg
     4201 tccacaagaa ttaagaaatt ttacaagtat aaattcctta cctcagctgt tcaagaaata
     4261 tctaacatct gatgcacagg ggcaattcat cttaaagccc agagactcag aaagaatcct
     4321 gcaggaaaaa aatataaatg gaaaaactct taagaaacca aaaacttcta taacatcgtg
     4381 gtggcacagg tactctgtgc gccaccagga ccaagtatgc agtagcccac gagttaataa
     4441 gggaggaaaa ctgtttggaa gagaactcag ttccatttgt catgataaca aactgccctc
     4501 agcaattctg gacatgctgt ccctactaaa aaggaaaggg cccacaacca agggtgtctt
     4561 tacagtatct ccaagtgtaa ccctgcgcca aacagtaaag gacaaattgg attcagacga
     4621 agaggtggat atgaacaagc aatctgtgca tgtagtggcc tggatcttta aggacttcct
     4681 acaaaacatt gaaggaagtc tgatgacttc aaagctctat gatgaatgga tttctgtaac
     4741 cgaaaagatc aacgaggaag agaaattagc agcagtgcag agtcttttag aaaaactgcc
     4801 aactgcaaat gctgctctgc tggggcaact ttttcaaatt ttatttgaag ttaaaagtaa
     4861 ttcttcggtt aatggaatgt cttcttacca actatcttgt gggatagccc catgtctctt
     4921 attcatgccc agctcctgta ataatggggg gacaaatgac attgctaaaa agatatctct
     4981 gacaacattt atgattgaaa atgctcgaaa actattcggg gaggacttgg ttgaggtttg
     5041 gtatgaaaca tctctatttc atcctcccgg agagaagtcc tcacgttccc agaatactgc
     5101 aacaaacacc agcaccatga aggaagtaga acgtggacac agcagctgcc ccagtggcaa
     5161 gacatgtact catggctatg atgcactgcc gagaagtgca gctgatcatc atccctatga
     5221 gggcattacg gattcagaga aacacaaagg cagtagtata tatgccagcc caccagtacc
     5281 ttatcaaaat ctaccacatc caaaaaagaa atgttatttt gggaaatctc ttaccagtat
     5341 ttttgaagac aaaaagatgt ctggtctaat aatcgatatg ctgtccataa ttgccgaaaa
     5401 agggcaagac tcagatgaca ttttcaaaat tatacctgaa aattcacact attccttgag
     5461 gaataggatt gacaataaac aatacataaa ttggaatcaa gaaaacgtga taattatagc
     5521 atccgtttta acggacttta ttagaagcat tgatggaagc ttgctgacat ctgatttata
     5581 tgaaaattgg cttagcgtcc tagatgaagg aactgtgatt gaaaaagtta ttgccatcca
     5641 aagcctttta ctaaagattc caacagaaaa ccttatacta ctaaaccatc tcatttctgt
     5701 attagcaata ataaaagatt catccatgaa taatttagac agtgacaaat tagctctccg
     5761 catagctcct tatctgctaa gggatgagac tacaaggaac tcaccgtttt tgcaggacat
     5821 ctcaagaaag acgttgctta tacaagtcat gattgacaac tatctgctaa tatttggaaa
     5881 tgataaaacg tatttaaaaa aaactgacaa aagagtagat ggactaaaaa cctctacaca
     5941 ttctataaag tctgcagaga aatcacctat tatgaaagaa gccataggtg gacacaatga
     6001 gaaatcctgg aatgatgaaa aattaaatat ttcacatgct cctctgaaaa agggaggttc
     6061 tacagattca gagaaacaac aaggcagtag tgtatatgcc agcccaccag gaccttccat
     6121 aaatccacca caaacaacaa agaaatgctt gtttggaaaa actcttagga gtatttttga
     6181 agacgaaaag gtgtctggtc taatatttga tatgatgtcc ataattgccg aaaaagggca
     6241 agactcagat gacattttca agattatacc tgaaaattca cactggtcct tgaggaataa
     6301 gattgacagt gaacaataca taaattggaa tcaagaaagt gtgataatta tagcatccgt
     6361 tttaatgaac tttattagaa gcattgatgg aagcttgctg acatctgatt tatatgaaaa
     6421 ttggtttagc gtcctagatg aaggaactgt gattgaaaaa gttattgcca tccaaagtct
     6481 tttagtaaag atcccaccag aaaaccttac actactatac catctcattt ctgtattagc
     6541 aataataaaa gattcatcca tgaataattt agacagtgac agattagctc tccgcatagc
     6601 tccttacctg ctaagggatg agactacaag gaactcaccg tttttgcagg atatctcaag
     6661 aaagatgtct attatacaaa ttatgattga caactatctg ctaatatttg gaaattatcc
     6721 aacatatggt aaacacattg acaaaaggtc tgatggatta aagacctcta cagattccat
     6781 aaagtttgcc gacaaatcac ctattattga agaattcata gttggaatca atgggaaatc
     6841 ctgtgataat gatgaaaatt tcaatatttc atatgctgct ctgaaaaagg aaggtcctac
     6901 agattcagag aaacaacaag gcagtagtgt atgtgcaagc ccaccaggac cgcccataaa
     6961 tccaccacaa acaacaaaga aatgcttgtt tggcaaaact cttaggagta tttttgaaga
     7021 caaaaaggtg tctggtctaa tacttgatat gttgtccata attgccaaaa aagggcaaga
     7081 atcggatgat ttattcaaaa ttgtacatga aaattcacac ttttccttaa ggaacaggat
     7141 tgacagtgaa caatgcattg actggaatgt agaaagcgtc ctagatatag catccgtttt
     7201 caaggacttt attaaaaaca tagatggaag cttgctgaca tctgatttat atgaaaattg
     7261 gcttagcgtc atggatgaag ggactgtggc tggaagaatt actgccatcc aaagactttt
     7321 actaaggatc ccacaagaaa attttagtgt actaaaccat ctcatttctg tattagtaat
     7381 aatcaaagac tcatccatga ataatttaaa cagtaagaga ttatctatcc gcatagctcc
     7441 ttatgcgctt tgggatcgga ctagaagggg atcattgttt gggagtgata tgtcaataaa
     7501 gatatctctt atgcaaatca tgattgacaa ctatattcca atatttgaaa attataataa
     7561 atattgctct gatggactaa agacatctgc tgatttcata aattcttcag gaaaatcacc
     7621 tattatgaaa gaagtcatag gtgaccacaa tgggaaaacc tgtgatgatg aagaatttga
     7681 tatttcatat actatcctgt aggaggaaag tcctatagca ggacagaaca gaacaaccac
     7741 cacatataag tggtagagta tgactgaaga cgttctaagg tcattctatt cttatgttcc
     7801 tgtctacctc ccactaaatc atagcagaag atattattac aagatcctac ttctgcttta
     7861 tatttcacca tattagttac aaatagtttc cctaattatt cttattatat gctgtagttt
     7921 atatatttgc tattataata aattttatta aattgtgtta ttgcttacac tacaatgtgc
     7981 cttgttcatg attctccata gtctttggaa aatggcattt ttcagtctct gcctctacag
     8041 cccacttcta gtactagttt tcccacctca gttaccaaag tatggccaga agctaatgac
     8101 attaaaaatc tctcagagtt atgcctcgaa tccagtgcca taaaaaacta aataaaattc
     8161 cattaacaaa attaatcatc acacttgttg aaattagagg tggattatgg tttttagaat
     8221 acacaaaatg acctgaaaac atatgtgcct tagcaattga gatgtgaaat gaatttgggt
     8281 tataaaaaca tacattaaga aacaagcaaa actgggtatt gtagcaccag catctctaga
     8341 ccagaagctt ctacctggat ggagagtaga gttggagaca ttaagaagtt aagacaaggc
     8401 atttggccag attttcctga catgttgttc agtaatgatt aaaaagagat cttgtgacag
     8461 aaagagagag agagagagag agagagagag agagagagag agagagagaa gagaagagaa
     8521 gagaagagaa gagaagagaa gagaagagaa gagaagagaa gagaagaaga gaagagagag
     8581 aaaaacgctg gaggctctta aatttcaata agctgaaagc tgcattacat acactcagaa
     8641 gtgcacagaa gcatacagca tatttgttgt atctctcttc ataaccagag acctcaacat
     8701 gaaatattct ttattcatgg tttgtctatc tcaaaagggt cttaaataca ttggagatat
     8761 ggaaatctta gagaaaacct ccagtaaaat aattcataat ttccataatt actgcttctt
     8821 ggtccctcct gatctcctat tattttaagt tcaaaatgtt ttcatttatt actattattt
     8881 tttcactttt attgaaaatt gatttatagc gctgtaggct gaatttttct cttccttccc
     8941 tgcaatctct aattcatttg aatattgttt tatatatgtg tttatttata tatatatatc
     9001 tgcatctaaa aatatgatta cgagttgaga ccattttcct gtgtttgtga atatggtttt
     9061 catgaagtta agtgtgtatt agacaatcaa tatgcagata tttgctg
//
