LOCUS       NM_001395620            1394 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 20 open reading frame
            96 (C3h20orf96), transcript variant 1, mRNA.
ACCESSION   NM_001395620 XM_006235246
VERSION     NM_001395620.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1394)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jul 22, 2021 this sequence version replaced XM_006235246.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.283102.1,
                                           SRR26360186.151713.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-130               JAXUCZ010000003.1  161349943-161350072
            131-188             JAXUCZ010000003.1  161350246-161350303
            189-288             JAXUCZ010000003.1  161350826-161350925
            289-404             JAXUCZ010000003.1  161357027-161357142
            405-563             JAXUCZ010000003.1  161361049-161361207
            564-663             JAXUCZ010000003.1  161363040-161363139
            664-821             JAXUCZ010000003.1  161364206-161364363
            822-923             JAXUCZ010000003.1  161364454-161364555
            924-1010            JAXUCZ010000003.1  161364669-161364755
            1011-1129           JAXUCZ010000003.1  161365874-161365992
            1130-1394           JAXUCZ010000003.1  161367743-161368007
FEATURES             Location/Qualifiers
     source          1..1394
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q41"
     gene            1..1394
                     /gene="C3h20orf96"
                     /note="similar to human chromosome 20 open reading frame
                     96"
                     /db_xref="GeneID:502684"
                     /db_xref="RGD:1559448"
     exon            1..130
                     /gene="C3h20orf96"
                     /inference="alignment:Splign:2.1.0"
     CDS             120..1190
                     /gene="C3h20orf96"
                     /codon_start=1
                     /product="uncharacterized protein C20orf96 homolog"
                     /protein_id="NP_001382549.1"
                     /db_xref="GeneID:502684"
                     /db_xref="RGD:1559448"
                     /translation="MAQKRINSRTQFAGHKLQVHMSSGAEKNLKPSTLPPLRQAKGHS
                     KRKTKSVTKIQPVAQSQVSVDMTTATKTPRALRRRDQPHHGKVQAKVRLMKSMLRNQR
                     TSLQELYSHEGYLSKLNQELIKTILETEDSTALSVREMLQQQNILGNIIDILEYSNKK
                     RVQELRSEFQEWKEKEESKTNTLQWEVEQLNSEIRKANEEVNLLSTYMDHEYPIRLVQ
                     IANHVRLVQQAKDSQQDELDNLREMREKVLAFFSNIIQEKKRRILKSLVVKTQEPHEN
                     RLLLKTRDSRRLQRCVLWFEELIKQLKEEIPMLISEVEQMYAEIWNPREAVFKDVLLQ
                     RPKCTPDMAVELNIPTQELFPF"
     exon            131..188
                     /gene="C3h20orf96"
                     /inference="alignment:Splign:2.1.0"
     exon            189..288
                     /gene="C3h20orf96"
                     /inference="alignment:Splign:2.1.0"
     exon            289..404
                     /gene="C3h20orf96"
                     /inference="alignment:Splign:2.1.0"
     exon            405..563
                     /gene="C3h20orf96"
                     /inference="alignment:Splign:2.1.0"
     exon            564..663
                     /gene="C3h20orf96"
                     /inference="alignment:Splign:2.1.0"
     exon            664..821
                     /gene="C3h20orf96"
                     /inference="alignment:Splign:2.1.0"
     exon            822..923
                     /gene="C3h20orf96"
                     /inference="alignment:Splign:2.1.0"
     exon            924..1010
                     /gene="C3h20orf96"
                     /inference="alignment:Splign:2.1.0"
     exon            1011..1129
                     /gene="C3h20orf96"
                     /inference="alignment:Splign:2.1.0"
     exon            1130..1394
                     /gene="C3h20orf96"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acgctgctag cggaaagcgg cctggtctcc ttgggatcca ttctgagaca agaggtggca
       61 gaagcctcac gggtatctgg agtcagtttg tacctagaga atcaggattc ttttccccaa
      121 tggcacagaa acgcatcaac tctagaactc aattcgcagg gcacaagtta caagtacata
      181 tgagttcggg ggcagagaag aacttgaagc catccaccct gcctcccctc cgacaagcca
      241 aaggccacag caaaaggaaa acgaagagtg tcactaaaat ccaaccagta gcacagtccc
      301 aggtctctgt agatatgaca accgcaacga agactccacg agcactgcga agacgggacc
      361 aaccgcacca cgggaaagtg caggccaagg tccggctgat gaagtcaatg cttcgaaacc
      421 agcggacctc gctccaggag ctctacagcc atgaaggcta cctcagcaag ctcaaccagg
      481 agctgatcaa gaccatcttg gaaactgagg acagcacggc cttgagcgtg cgtgaaatgc
      541 tgcagcagca gaacatcctc gggaatatca tcgacatctt ggagtactca aacaagaaga
      601 gggtgcaaga gctgaggtct gagttccagg agtggaaaga gaaggaggag agcaagacaa
      661 acacacttca gtgggaggtg gaacagctga actctgaaat ccggaaggcc aatgaggagg
      721 tgaatttact tagcacctac atggaccacg agtatcccat caggttggtt cagattgcca
      781 accatgtgcg cctggtgcag caggcaaagg acagccagca ggacgagctg gacaacctta
      841 gggagatgcg tgaaaaagtc ctggcatttt tttccaacat aattcaagag aagaagagga
      901 gaatcctgaa gtctctggtg gtgaaaaccc aggaacccca tgagaacaga cttctgctga
      961 agacccggga cagccggcgc ctgcagaggt gcgtgctctg gtttgaagag cttatcaagc
     1021 agctgaaaga agagattccc atgttaatct cagaggtgga gcaaatgtat gcagaaatct
     1081 ggaaccctcg agaggccgtt tttaaggacg tcctgctgca gagacccaag tgcaccccag
     1141 acatggctgt tgagctcaac atccctacgc aggagctgtt ccctttctag atagcagtgc
     1201 tgcctcctct cctccctcct ctcttcccag caccaggggt tttggctatt gacttacaag
     1261 atggcgtctc tattataaat ctgatccaca gccctcctct acccatctcc cttgccgctt
     1321 ggactgagca ggaatcccca gtccagcctg cttgttcctt ggtgccaata aagttgtgtt
     1381 tgtgtttgct tggg
//
