LOCUS       NM_001394380            1519 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus RIKEN cDNA 4931429L15 gene like (4931429L15Rikl),
            transcript variant 1, mRNA.
ACCESSION   NM_001394380 XM_017595837
VERSION     NM_001394380.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1519)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Apr 16, 2021 this sequence version replaced XM_017595837.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760389
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-136               JAXUCZ010000008.1  55507094-55507229   c
            137-214             JAXUCZ010000008.1  55502314-55502391   c
            215-303             JAXUCZ010000008.1  55501127-55501215   c
            304-422             JAXUCZ010000008.1  55500159-55500277   c
            423-660             JAXUCZ010000008.1  55499635-55499872   c
            661-799             JAXUCZ010000008.1  55497915-55498053   c
            800-950             JAXUCZ010000008.1  55496838-55496988   c
            951-1082            JAXUCZ010000008.1  55496150-55496281   c
            1083-1221           JAXUCZ010000008.1  55495063-55495201   c
            1222-1519           JAXUCZ010000008.1  55494682-55494979   c
FEATURES             Location/Qualifiers
     source          1..1519
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q23"
     gene            1..1519
                     /gene="4931429L15Rikl"
                     /note="RIKEN cDNA 4931429L15 gene like"
                     /db_xref="GeneID:500990"
                     /db_xref="RGD:1561633"
     exon            1..136
                     /gene="4931429L15Rikl"
                     /inference="alignment:Splign:2.1.0"
     exon            137..214
                     /gene="4931429L15Rikl"
                     /inference="alignment:Splign:2.1.0"
     CDS             183..1289
                     /gene="4931429L15Rikl"
                     /codon_start=1
                     /product="uncharacterized protein LOC500990"
                     /protein_id="NP_001381309.1"
                     /db_xref="GeneID:500990"
                     /db_xref="RGD:1561633"
                     /translation="MQFNPFSQDTWRHGHRRAYSNISERLSCLTLQEPSVSHLYQIFS
                     PGDRRSYLLDDSLSNSIQRESLAVPMGLEDSGSRGQQKQQQPGAVLEDLEEQEIAPTD
                     VKYRLQLLDEAPLRSKSSSVQSQGHKPGWIPSSKTHREWFKPWKMDMTYPENERSHSG
                     HTQGRRMTPRAQWRHVEYDSQDQDTQSPVWSQALFPGLDKSSQGVIQCTQHVSREREM
                     VSGWSMTHAPQEMGQAKQGPAFLKTKGTAKFNVATTARMSCLPPLKLLEKKVKSRCPP
                     NTPGIFQDWRAQPQGLYGSDERLLAPFEDQVNTRVTYMPLFTEKVKFVSPKTAVSNPK
                     QTHSQLSRTNQPAFPGQFRNWTSGREHLEKGLPE"
     exon            215..303
                     /gene="4931429L15Rikl"
                     /inference="alignment:Splign:2.1.0"
     exon            304..422
                     /gene="4931429L15Rikl"
                     /inference="alignment:Splign:2.1.0"
     exon            423..660
                     /gene="4931429L15Rikl"
                     /inference="alignment:Splign:2.1.0"
     exon            661..799
                     /gene="4931429L15Rikl"
                     /inference="alignment:Splign:2.1.0"
     exon            800..950
                     /gene="4931429L15Rikl"
                     /inference="alignment:Splign:2.1.0"
     exon            951..1082
                     /gene="4931429L15Rikl"
                     /inference="alignment:Splign:2.1.0"
     exon            1083..1221
                     /gene="4931429L15Rikl"
                     /inference="alignment:Splign:2.1.0"
     exon            1222..1519
                     /gene="4931429L15Rikl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acccaggata cccattgctg ctccagaatt ctctgcttga gcggagcagc tctcccttca
       61 gccggtttag aacaccttcc tttttactat gataagctca agttctgcaa aacccaacgg
      121 cggtttgtcc acacaggttc tgaaaaggag ccaggtactg gctaaccaac acaaccggcc
      181 gaatgcagtt caaccctttc tctcaggaca cttggagaca tggacaccgc cgtgcctact
      241 ccaacatctc tgaaaggctg tcttgcttga ctctccagga gcccagtgtc agccatcttt
      301 accagatttt ttctcctgga gacagaagat cctacctgct tgatgactct ttatccaatt
      361 ccatccagcg agagtccctg gctgtcccca tggggcttga ggacagtggc tccaggggtc
      421 agcagaagca gcagcagccc ggggctgtcc ttgaggatct ggaagagcag gaaatcgccc
      481 cgacagatgt gaaataccgc ctgcagctgc tcgatgaggc cccattgcgg agcaagagtt
      541 ccagtgtaca aagccagggc cacaagcctg gatggatccc atccagcaaa acccacagag
      601 agtggttcaa accctggaaa atggatatga catatcccga gaatgagcgt tcccattcag
      661 gtcataccca gggcagaagg atgacaccaa gagcacagtg gagacatgtg gaatatgaca
      721 gccaggacca ggacacccaa tccccagtgt ggagtcaagc cctcttccct ggtctagaca
      781 agagcagtca gggagtcatc caatgcaccc agcatgtgtc gagggagagg gaaatggtat
      841 ctggttggtc catgacccat gcacctcaag agatgggcca ggcaaagcaa ggaccagcct
      901 tcctgaagac gaagggaacc gccaagttta atgttgctac aacagccagg atgtcctgtc
      961 tgccgcctct caagctcctg gagaaaaaag tgaagagtag gtgtcccccc aacacacctg
     1021 ggatcttcca agactggaga gctcagcccc aagggctcta tggaagtgac gaaagactcc
     1081 tggcgccatt tgaagatcaa gtcaacacga gggtcacata tatgcccttg tttactgaaa
     1141 aagtgaagtt tgtaagcccc aagacagctg tgtcaaaccc aaaacaaaca cattctcaac
     1201 tgagtaggac aaatcaacca gctttcccag gtcagttcag gaactggacc tcaggaagag
     1261 aacatctgga aaaaggactg cctgaataaa tctgggaaat cctaacagaa gcctgcaatc
     1321 ccagcactcg gctgaggcag ggctgctgtg agttctaggc cagcgtgggc tgtagtgtga
     1381 gatgctgtca cgcagacaga aatcccaggc atgacgggac acaactgtaa tcacagccct
     1441 taggaggcgg aagcaggagg atccctgtac tacttaggga gtttgaagaa agcctgggct
     1501 acgtgaaacc ctggaggga
//
