LOCUS       XM_039111343            4785 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to casein kinase 1, gamma 3
            (LOC500584), mRNA.
ACCESSION   XM_039111343
VERSION     XM_039111343.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4785
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4785
                     /gene="LOC500584"
                     /note="similar to casein kinase 1, gamma 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 90 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:500584"
                     /db_xref="RGD:1598209"
     CDS             1490..3439
                     /gene="LOC500584"
                     /codon_start=1
                     /product="zinc finger protein 260"
                     /protein_id="XP_038967271.1"
                     /db_xref="GeneID:500584"
                     /db_xref="RGD:1598209"
                     /translation="MYCICLVKRSRTSPTCQLLVFKPGCEISRKLPIFESVRRTAKRM
                     SVALGNTLQGFLTFKDVAPEFTLEEWESLNYAQRALYMDVILETYNNLLSVENNLIGG
                     KHGNVLEQDTECIVHEHMNIQKNFCKWDEISKMTLESTQSTPYKTHLRDSSLQSSNLK
                     RHRAGKMREIYKYKDCVQFSNECAILGVNSGIHIENKEHKNTEFDKEFVYKHKQMLKQ
                     DINGKNLHQCSTCDKCFARKRNLHLHQRIHSAEKPYKCSQCDKYFAQQSCLMRHQRSH
                     SGEKPYKCNQCDKFFAQVSHLSIHQRSHTGDKPYKCSECDKCYTQKGTLRSHMRIHTG
                     EKPYKCDKCDKYFGRKSHLRVHQRIHTGDKPFKCSECDKRFTEKGPLRNHMGIHTGEK
                     PFKCSKCDKCFVYKCSLRIHQRIHTGEKPYKCSQCDTYFARQYWLMCHQISHTREKPY
                     KCNQCDKSFAQVSYLSIHQRIHTGDKPYKCSECDKCFRYKGSLKIHQRIHSGEKPYKC
                     SECDKYFSQQANLSIHQRIHTGDKPYKCSECDKCFGYKGSLRIHQRVHTGDKPYKCSE
                     CDKCYTQKGTLRNHMRIHTGEKPYKCSECDKCFRYQSNLTIHRRIHIGDKPYKCSKCD
                     KWFGHRVSLRIHQRICTGEKPNKCG"
ORIGIN      
        1 caaactttct cagtgtcttt gctgtctccc tttcaggaag tcctggtggg agactcgtcc
       61 cagagtcctg gaggtacctg aaaacttcct taagctgcag ttgctgtgcc ggcttcctag
      121 gacattcatc agctggtcct gtcaccctgc caggtcagag gagctgatgc gaccgggaaa
      181 caggcaggag cggagcagcg gtgtggagcg ggggtgcatt ttctgcctcc actcttataa
      241 ttctgtcgtg gatatcttag catttcagga agtttgagat tctgtgaact ggggttgaag
      301 gtgatgcttt aattagtttt gtggtcgcca gaatattttt ctaaaataac ctcgtagatc
      361 cttggccgca tctgtagttt gtacagcagg gttttctttc aaaagcctta gtaaagttct
      421 tcgagttcaa attcatggat gctttcttaa ctcccctgtt cctccgtttg ccgttccatt
      481 tccctttctc tagcggaccg aataggtatt ccaagagagc tttgtagatc tttgacatat
      541 gaggaaccag tgcagatttg attgaattag aaaatatttg ttataaagcc gtttcatatg
      601 gctgtaaatg taaacatttc ctgagttaag ttatagtctc cattaatttt acactgaggt
      661 atatgcaggc tgtgatgtaa acacagcatt cagaagtgtg acttcatagc cttcataggt
      721 atatttataa atggaaatct tactctagat tgagacagaa ttagacagca ccttttgaat
      781 tacccactta agttaaatgt ctccttggtt catgaaaagc tctctgacca tgcacattca
      841 tggtttgttg aattctgcaa tgttcgttca cttcttgccg gtgtgggaat gcttagaccc
      901 tgcactcggc ttttttcaga gccctctggt tggaggagtt caacagtctg gattctgtgg
      961 gacacaatag ttttcttgca gtgtttcttt ctcttcctca gtgctgcttg gaaaagaact
     1021 gtgcatgaat gttaactgtg tgactacctg ttacatctca tagggaaaac tgaaatcctc
     1081 agagaaagag gcattttcat gatatcttct ctttccttca tacttatcct tttgctactt
     1141 gttcatatct ttcatgtttg tctcatgaaa agttccaggt tctttctcaa caatattttc
     1201 ccattttcag gtctctatat gctcagccaa tctccataat tgcaaatcaa aactaggagc
     1261 cctggtcggt aaaggccaaa gagacttcta acaaaggatc caggattttt aatttggaag
     1321 gttttgctgg cctcatgagc agctatgtgt ggttcagatt gttctccatt gattgtgtga
     1381 gtagagactt actgtgttca tgaggaatca ttcctacttt tcagaaccca tgatatttgg
     1441 cagatagaat ctttgtactc caagactata ggatacatat ggaaaataga tgtactgtat
     1501 ctgcttggta aaaagaagtc gaacttcacc aacgtgtcag cttttagttt tcaaacctgg
     1561 ttgtgaaatt tcaagaaaac ttccaatatt tgaatctgtg agaagaacag caaaaagaat
     1621 gagtgtggct ctgggaaaca ctctacaggg tttcttaacc ttcaaagatg tggctccaga
     1681 gttcacacta gaggaatggg aaagtctcaa ttatgctcag cgggcactgt acatggacgt
     1741 gattttggag acgtacaaca atctattgtc tgtggaaaat aatctaatag gtggaaaaca
     1801 tgggaatgtc ttagaacaag acacagagtg cattgtccat gagcatatga atatccaaaa
     1861 gaacttttgt aaatgggatg aaattagcaa aatgactctt gaatccaccc aaagtacacc
     1921 ttataaaact catctccgag attcctccct tcagtcctca aacctgaaaa gacatagagc
     1981 tgggaaaatg agagaaattt acaaatataa agactgtgta caattttcaa atgaatgtgc
     2041 tatccttggt gtaaattctg gaatccacat agagaacaaa gaacacaaaa atacagaatt
     2101 tgataaggaa tttgtctata aacataaaca gatgctgaaa caagacatta atggtaagaa
     2161 ccttcaccaa tgtagtacat gcgataaatg ctttgccaga aaaaggaatc ttcatttgca
     2221 tcaaagaatt cattcagcag agaaacctta caaatgtagt caatgcgaca aatattttgc
     2281 ccaacaatcg tgtcttatgc gtcatcaaag aagccattca ggagagaaac catacaaatg
     2341 caaccaatgt gacaaattct ttgcccaagt gtcccatctt agtattcatc agagaagtca
     2401 tacaggagat aaaccttaca aatgcagtga atgtgacaaa tgctatactc agaaaggcac
     2461 tctgagaagc catatgagaa ttcatacagg agagaaacct tacaaatgcg ataaatgtga
     2521 caaatacttt ggcagaaaat cccatcttag agtgcatcag agaattcata caggagataa
     2581 acctttcaaa tgcagtgaat gtgacaaacg ctttactgaa aaaggccctc tgagaaacca
     2641 tatgggaatt catacaggag agaaaccttt caaatgcagt aaatgtgaca aatgctttgt
     2701 ctacaaatgc agtctgagga ttcatcagag aattcatacg ggagagaaac cttacaaatg
     2761 tagtcaatgt gacacatatt ttgcccgaca atactggctt atgtgtcatc aaataagcca
     2821 tacaagagag aaaccttaca aatgtaacca atgtgacaaa tcctttgccc aagtatccta
     2881 tcttagtatt catcagagaa ttcatacagg agataaacca tacaaatgca gtgaatgtga
     2941 caaatgcttt cgctacaaag gcagtctgaa aattcatcag agaattcatt caggagagaa
     3001 accatacaaa tgcagtgaat gtgataaata ctttagccag caagccaatc ttagtattca
     3061 tcagagaatt catacaggag ataaacctta caaatgcagt gaatgtgaca aatgctttgg
     3121 ctacaaaggc agtctgagga ttcatcagag agttcataca ggagataaac cttacaaatg
     3181 cagtgaatgt gacaaatgct atactcagaa aggcactctg agaaaccata tgagaattca
     3241 tacaggagag aaaccataca aatgcagtga atgtgacaaa tgctttcgct accaatccaa
     3301 tcttactatt catcggagaa ttcatatagg agataaacct tacaaatgca gtaaatgtga
     3361 caaatggttt ggccacagag ttagtttgag aattcatcag agaatttgta caggagagaa
     3421 accaaacaaa tgtggttaat atgacaaatg ctttacccaa aactacggtg ttcgtgtaca
     3481 tcagagactt catacaggag agaaacttta caaatgtgaa tgtgacatat gctttggccg
     3541 acagtctcat cttagtattc atcagagaat ttatttagga caaaaacctt tcaaatttcc
     3601 tttatgtggg aaatgcttta cccactaagt cttaattcat cagagaattc atactggaga
     3661 gaaacaatgt aagtgaactg aatgtgacaa atcttttact cacaaagtta ctttgacgat
     3721 tgttcagaga attcatccag gagaataaat ttacaaatgt gtgacaagta ctttacccat
     3781 aaatgcagtc ttcaagtaca ttagagactt catagaggag agaaacctta caaatgcagt
     3841 gaatgtgaca aatgctttac ccaaatgtta gcctagaaag gcatcagaga tttcatacat
     3901 gagataatac ttgcaagtgt gatgtacatg aaaaatgcat taactacaat gtaagtctga
     3961 cagattacat acagtggaga aacattataa atttagtcaa taaaacaatt ctttacctgc
     4021 aaatatcgtc ttaaaattca ttagataata cttaaagtag agaaaatttc aaatgtttta
     4081 gagatgtgaa ccttttagcc aatcttttag aatcaacaaa atatgtacag gtgacaatct
     4141 gaagaaatat aatgtatttg gaaatatctt tgacttcatt tcagatcaga gaaaacgttt
     4201 taaatttttt ttgtgcggaa gtatatcttg caaaaattga gcttccgcac tagagaattt
     4261 gtatgattat gaaaacttca gaaaccttca tgcagtgttc aaatcttaga aaatgtcagg
     4321 tatttatggt gagaaaaact ctgaaaatat gacaatgtag gaaagtcttc attaaacttt
     4381 tacctgttca ccctgaaata ttacaagatg aagacatgtg gggaagtcag aataatatag
     4441 tgttgtgtaa cactttcatg gcaacagaaa ttatctattt caaaggaact tcacctctca
     4501 aaatgtctaa taaaactgtc aggattctgt atattcaagt gatcaattca gacaaattat
     4561 acttaaaaag gtttatttga caaactcaga taccaaaact gtttgttctt tatcctataa
     4621 atatgtctac agatgttaag tctcctttga caatccagta ctcataattc ttattaaatg
     4681 ctggtttcat gtttgaggat aacgactgag actgattatg tgtccttgtg ctgtgtggtc
     4741 aacaactcct tcccctttgt tgtgtaaata aatgtgaatg attcc
//
