LOCUS       NM_001024346            1902 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 9 open reading frame
            43 (C5h9orf43), mRNA.
ACCESSION   NM_001024346 XM_575839
VERSION     NM_001024346.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1902)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Apr 6, 2023 this sequence version replaced NM_001024346.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079053.1, SRR26643299.23087.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-246               JAXUCZ010000005.1  80993348-80993593
            247-399             JAXUCZ010000005.1  81000360-81000512
            400-544             JAXUCZ010000005.1  81000624-81000768
            545-599             JAXUCZ010000005.1  81008018-81008072
            600-700             JAXUCZ010000005.1  81009600-81009700
            701-761             JAXUCZ010000005.1  81011232-81011292
            762-925             JAXUCZ010000005.1  81012605-81012768
            926-1073            JAXUCZ010000005.1  81013410-81013557
            1074-1131           JAXUCZ010000005.1  81013893-81013950
            1132-1175           JAXUCZ010000005.1  81014233-81014276
            1176-1218           JAXUCZ010000005.1  81014471-81014513
            1219-1358           JAXUCZ010000005.1  81015716-81015855
            1359-1431           JAXUCZ010000005.1  81016980-81017052
            1432-1902           JAXUCZ010000005.1  81017278-81017748
FEATURES             Location/Qualifiers
     source          1..1902
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q24"
     gene            1..1902
                     /gene="C5h9orf43"
                     /note="similar to human chromosome 9 open reading frame
                     43"
                     /db_xref="GeneID:500475"
                     /db_xref="RGD:1563460"
     exon            1..246
                     /gene="C5h9orf43"
                     /inference="alignment:Splign:2.1.0"
     CDS             186..1661
                     /gene="C5h9orf43"
                     /codon_start=1
                     /product="uncharacterized protein C9orf43 homolog"
                     /protein_id="NP_001019517.2"
                     /db_xref="GeneID:500475"
                     /db_xref="RGD:1563460"
                     /translation="MRLRSSIRTGSVMKGRKAFDSMRVVDESQWDEAVCTLAGCQHPQ
                     CWASLRRIERGHPRILDTSSKSPWESEDKLPTLTVVNIMDTCLWAKKRVVQRQASEFT
                     FPKERSLLLKPASKCHGRSWKSLRDKDATSHSRPPKLSVLNLNEAKLPFSGDDRNMVV
                     TWVPEEMAKKTIQEKAGVPSRSVKKRRKKWGETSKPSLYYRGRRYLRSPAVLVPPPSP
                     VHFLEQLHSEAIPLWAQVDMLPQDLLKECILSHEKSTACPEVKMELSKMKKSLPLEKS
                     RPDSAVSSKMYLTIQRLTLQRPSLRYPDCLKKLRHNLKRDSWKQQEEKTSTKKQEAKK
                     KAKRDVEEQYGEETMSSDSFHDPSFHDHVGLRISRREIERKLLKGEVGMEKTSLERRV
                     SVEEPMAYEFGSYYTASYYTSPESALLYETIYQDLNDGEETELEVEAFSKDNNPKSLS
                     AVMDNISWNPELKLLRILQATEEENEEGHLSRAQSEASLEA"
     exon            247..399
                     /gene="C5h9orf43"
                     /inference="alignment:Splign:2.1.0"
     exon            400..544
                     /gene="C5h9orf43"
                     /inference="alignment:Splign:2.1.0"
     exon            545..599
                     /gene="C5h9orf43"
                     /inference="alignment:Splign:2.1.0"
     exon            600..700
                     /gene="C5h9orf43"
                     /inference="alignment:Splign:2.1.0"
     exon            701..761
                     /gene="C5h9orf43"
                     /inference="alignment:Splign:2.1.0"
     exon            762..925
                     /gene="C5h9orf43"
                     /inference="alignment:Splign:2.1.0"
     exon            926..1073
                     /gene="C5h9orf43"
                     /inference="alignment:Splign:2.1.0"
     exon            1074..1131
                     /gene="C5h9orf43"
                     /inference="alignment:Splign:2.1.0"
     exon            1132..1175
                     /gene="C5h9orf43"
                     /inference="alignment:Splign:2.1.0"
     exon            1176..1218
                     /gene="C5h9orf43"
                     /inference="alignment:Splign:2.1.0"
     exon            1219..1358
                     /gene="C5h9orf43"
                     /inference="alignment:Splign:2.1.0"
     exon            1359..1431
                     /gene="C5h9orf43"
                     /inference="alignment:Splign:2.1.0"
     exon            1432..1902
                     /gene="C5h9orf43"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggaactcag tgtagctttt cattcaattc tactacaccg aattatgcat tagaattgtc
       61 catctttaat ttcattccct tcacaacttt gtgataattg tattaagaat aacttttatc
      121 taaaatttcg tttaaaaaaa tgctattatt cggacagcag taacctgggc aatctcaaaa
      181 gcttgatgag acttcgcagc tcaattcgga ctggttcggt aatgaaaggg cgaaaagcat
      241 ttgactctat gagagtggtg gacgagtccc aatgggatga agccgtctgt accttagcag
      301 gttgtcagca tccacaatgt tgggcatctc tccgacggat tgagaggggc catcctagga
      361 tcctagacac atccagcaaa tctccctggg aatctgaaga taaactcccg acactcactg
      421 ttgtaaatat catggatacc tgcttgtggg ccaagaagag ggtggttcag cgtcaagcat
      481 cagaatttac cttccctaag gaacgttctt tattgttgaa accagcctcc aaatgtcatg
      541 gaaggtcttg gaagtcttta cgtgacaaag atgcgactag ccattctaga cctcccaaac
      601 tttcagtatt gaatctgaat gaagcaaaac ttcctttctc tggagatgac agaaacatgg
      661 ttgtgacctg ggttccagaa gaaatggcga agaaaacgat acaagaaaag gctggtgttc
      721 ccagcaggtc tgtgaagaag aggagaaaga aatggggaga gacaagcaag ccgtctctgt
      781 attaccgtgg aaggcggtac ttgaggagcc cagcagtgct tgtacctcct ccctccccag
      841 tacacttctt ggagcaatta cattctgaag ccataccact atgggctcaa gtcgacatgc
      901 ttccgcagga tctattgaag gaatgcatct tgtcacatga gaaatccaca gcttgccctg
      961 aggtgaaaat ggagctgtct aagatgaaaa agtctcttcc cctggaaaag agccggcctg
     1021 acagtgccgt ctcatctaag atgtatctga ctatccagcg cctcaccctg caaagaccat
     1081 cactgcggta tcctgattgc ctgaagaagc tgcgccacaa cctgaagcga gattcctgga
     1141 agcagcagga ggagaaaacc tctactaaga aacaggaggc taaaaagaaa gccaagcgag
     1201 atgttgagga acagtatggg gaagaaacca tgtcgagcga ttccttccat gacccttcct
     1261 tccatgacca tgtaggactc agaatatcac gacgtgaaat tgaacgaaag ctgttgaaag
     1321 gggaggtggg aatggagaaa acatccctag agagacgtgt ttccgtagaa gagccaatgg
     1381 catatgagtt cggcagctac tacactgcca gctactacac cagtcctgag agtgctctac
     1441 tatatgaaac aatttaccag gaccttaatg acggggagga gactgagttg gaagtcgagg
     1501 ctttcagcaa agacaataac cccaagagcc tttctgcagt tatggacaat atcagctgga
     1561 accccgagct caaactgctg aggattcttc aggccaccga ggaggaaaat gaggaaggcc
     1621 atctttctag ggcacagagt gaggcgtctc tagaagctta ggctcaagcc atcacttggg
     1681 ggcagcctta gccagaagag ttcttggtat tctgaggaca acaaccttgg acacggggaa
     1741 gaaaagagag aatattgttc tttggatcct ccagaaggac caggccctag acaccctgta
     1801 ttcttcattt atgttttact tccaaattga gtggggataa aggtctaatt ccatggaata
     1861 gaggcagctt ttccacgatt aaacacaacc ccttctagca aa
//
