LOCUS       XM_006236077            2614 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to EF hand calcium binding
            domain 1 (LOC500007), transcript variant X1, mRNA.
ACCESSION   XM_006236077
VERSION     XM_006236077.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006236077.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006236077.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2614
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2614
                     /gene="LOC500007"
                     /note="similar to EF hand calcium binding domain 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 11 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:500007"
                     /db_xref="RGD:1588445"
     CDS             1923..2576
                     /gene="LOC500007"
                     /codon_start=1
                     /product="EF-hand calcium-binding domain-containing
                     protein 1-like isoform X1"
                     /protein_id="XP_006236139.1"
                     /db_xref="GeneID:500007"
                     /db_xref="RGD:1588445"
                     /translation="MEQRALKKLVESFRKTVKCFKKFEVECLIQLFYSLAGCPIGKVD
                     NTKLDCNAFRGVLQNFFGMTNDVLMNRVFFVFDKDGDSHVNLQEWIKGLAVFLRGTFE
                     EKMRFCFEVYYLSGDAYISREKIFDMLKSSLFHNSPEEENEEGIKDLVEISLKKMDYD
                     NDGKISFEDFEKAVRKDGLLLEAFGPCLPDAKTCFHFEALVFKNNSPASFEHNPLNT"
ORIGIN      
        1 tgtgctgatt aaagtggggg atgcacagaa cattttggca ggagaagagg cagagtaaac
       61 agctctttca cttagagtag ctgtgctctt acctcccttt gggttacagg tagttacaaa
      121 agtaactgca cccttttgtt ttgtttctgt tttttttttt tttaaacagg ctttctctgt
      181 ttagcccagg ctgtcctgga acttgctcta tagaccaggc tagccttgaa ctcagaggtc
      241 tgcctgccgc atctgcctct ttagtgctgg cactaaatgc atgcgccacc actgcccagc
      301 taccctcagg cttttagtga taaaaacagc atgtttctta ggaggtccct tacattctcc
      361 tgcttaaaga taatataaga tataaaaggt ttgagggata tattatatca cccctccccc
      421 caattttttt tttcaaaatt gatgcttatg caaatgctta aaaagcttgt tgggtcattt
      481 gattgtcacc tttcctgaat gtataagggc aggttatggg cttttctaga gtgtgacagc
      541 cacagcctgt aggaagcagc tgtttgttag aacagatgga aaatgggtga tttgatggga
      601 ggttgtgtct ttttcagagt ctgctgattg aaacacacct ttcatggttg gtgtttggtg
      661 accctagcag tctcctgata gacataaagg ggatatttgt ggggtgttgc ccctatgtta
      721 attccatggt tatgatgata cataagttaa taacatacct tctctcctcc accacacctg
      781 cccctttcct tttttggatg atttttatac ggattttaca aacctgacac gcctcttaaa
      841 ggtggcactg tgataactgt tggaaagtaa tggaaatctg tagaagtgtt ggctcgacac
      901 cagtgctagc ctttttggtc acttggattc ctttgtttgc tcatagctgt tttagtaccc
      961 taagagtatc caaactttat tttatccaaa atacaggttt gtgccttcag tcaagctgtg
     1021 ctaacccctg ctcttctttc ctttcatgta agcagtggta tagcctcagg gacagtcaat
     1081 gtgaattgct gtctgcagac ttagctggta gcctcacata agaaatttgc catatttcta
     1141 tttcaagcca ttggtattta gatttcaggt atatttataa ggaggatttt gagatctcct
     1201 cttgctttgt catagaagtt gttttctatt ttattgaaaa cttagaggga ctggggatat
     1261 gtgtacctgt acctcaggag tagatcataa ggctggtagg gcagaactac cacactcaga
     1321 aaagaatatt atgtcctaaa ttgtaaccat agttttagtg ttgcctcatc tctgtgaagg
     1381 ccgacacagc ctagaagctt agctgatctt ccaaggtctc ccaacaaaga taaaatggga
     1441 cagtggacat tttagccagc gtagcaatca gaccatgttt tcctactgtt aggtccaaat
     1501 cggaagcaat taagtgggtt ttatgttcga aaaactgtgt atgaggttgt gtggctctcg
     1561 tgagaaggtg cttggtgaca ttaggtggca gccttcagag gagctattga cagcttggga
     1621 aattatggcc atctaaagaa aggttttgtg attatatgtt caagtaggaa gaaaagtttt
     1681 aacttgcact gaaatagtat gaaataccat tttacatgag gcttagcctc ggagataagt
     1741 ttgctgcacg tgtactgagt agcagggtcc atccgttcat cttcaacctg cttgagaacg
     1801 ttctgtctgg ttgctgggaa gttgccatgg ccacattctg ttttggagtt gtagagttag
     1861 taccaacttg ggactcaagc ttgtaggtgg actgttgaaa cccacgagct gaagtggctg
     1921 tgatggagca gagggctctg aagaaactgg tggagtcctt cagaaaaact gtcaagtgct
     1981 tcaagaagtt tgaagttgaa tgtctcatac agcttttcta tagcttggcg ggatgcccta
     2041 ttgggaaggt tgataacacc aagctggact gcaacgcatt ccgaggggtt ctacagaact
     2101 tttttggaat gactaatgat gtgctgatga atagggtttt ctttgtattt gacaaagacg
     2161 gtgatagcca tgtaaatttg caagagtgga ttaaaggctt ggctgtgttt ctccgcggga
     2221 cttttgaaga gaagatgaga ttctgttttg aagtttatta tttaagtgga gatgcttata
     2281 tttcccggga aaaaattttt gacatgttga agagtagtct cttccacaac tctcctgaag
     2341 aagagaacga agaaggaata aaggatttgg tagaaataag cctgaagaag atggattatg
     2401 acaatgatgg caagatctct tttgaagact ttgaaaaggc agtgagaaaa gacggtcttt
     2461 tgttggaggc gtttggacca tgtttaccag atgcaaagac ctgctttcat ttcgaagctc
     2521 tggtattcaa aaacaactcc cctgctagtt ttgagcacaa cccgctcaac acttgaatta
     2581 aagtgagacc ctgatctcct ttatttgcat caca
//
