LOCUS       XM_039103655            3746 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to GTPase activating protein
            testicular GAP1 (LOC499607), transcript variant X1, mRNA.
ACCESSION   XM_039103655
VERSION     XM_039103655.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3746
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3746
                     /gene="LOC499607"
                     /note="similar to GTPase activating protein testicular
                     GAP1; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:499607"
                     /db_xref="RGD:1564926"
     CDS             176..3445
                     /gene="LOC499607"
                     /codon_start=1
                     /product="uncharacterized protein LOC499607 isoform X1"
                     /protein_id="XP_038959583.1"
                     /db_xref="GeneID:499607"
                     /db_xref="RGD:1564926"
                     /translation="MEMIEEEDVGKENQAMVCQGAVVFRRGWKRNKRYLTLLSDVLVV
                     SSKLNKKKFKVKHVIPLTYLWIGDETDIFRTDNSPASKTIYLYWPMGNAVVTFRSMEE
                     TIWWNFFLQRSIRDAKKQNKIDLSLQISTEDIARCDTPLYVKATNFDTVNDIMSKLLP
                     MMRKHNIEDYQLWFCPRPGEAPRALQGNEYPHDIIMINIQKNFSSRDLRHFTSFPSLP
                     GLIMKYLNSDAQGQFILRPRNSARSQQQKNMKEKTLKKQRTSTSSWWHRSCEPHPDQV
                     CTTPKVNNRGKLFGRELSSICKDGNLPLAILDMLSLLKREGPTTEGVFIIHPSITMCQ
                     TIKDKLDSEEEVDMNKLSVHVVSWIFKDFLQNIEGSLMTSKLYDEWIAVTKKVDDEEK
                     LAAVQSLLDKLPSANAVLLRQIFQILYEIKSNSSVNEMSSYNLSVGIAPCLLFMPSYC
                     NNGGTNDIPIKISLVTFMIENTPKIFGEDVVAVSYETSLTHPPGAKSSCSPDTSANTR
                     NVKQTNRGLSSCPTERTCPPDYNALPGSPAAPLPCEDILDSEKSEGNVYTNQAIPLLS
                     LPQAPKKCLFGKSLVRIFEGKSLPTPIFDMFSIIAEKGQDSDHIFNTVSEISHWSLRD
                     RIENDEHINWQEEDVLVIASVLMDFISNIKGSLLTSDLYEDWLTVMDEGTLFGRITAI
                     QRLTRQMPEQNFLLLQYVICVLVMISDSSMNNLDSHTLSLRIAPSVLCGQPASDALYG
                     DSASRKISVIKMMIDHYLEIFGNDNLFSKHIDERSDDLKMYIDLIFSKGKSPIMKKVI
                     VGPNGTTCSNDEKVNISNAALQEEFPTGSEKHEHDVSTIPSVLSPNRLRPRKKSLFGQ
                     PLTSIFEDNKLPTSILDMISIIAAKGQSSDQLFRTISENSQCSLRDKIDTEQPINWND
                     ECVLVVASVLKDFITNIDGSLLTYNLYENWLTVPEEETLAGQIIAIQSLLQQIPDPNF
                     ILLKYLICLLAIIKDSPMNKLDTKRLSIRLAPHVLWGWTSSDSLFGKVVSRKISLMEI
                     MIDNYIQIFENDNRYCIHIEKRSAVINKSADIINSDVKSTIMNKIIGGLNRKTCYNNE
                     I"
ORIGIN      
        1 gcctgacaac tacagaatcc tcagagctca gttgctttct agccactgca gtaaccagtt
       61 tggtgtttag aggcaggaag gcgaacgaaa atttcacatt gtttgataaa ttcttcattg
      121 caggctcgtc cagaaaggtg gagccctgta tgaagagaat tctttttttt tcaacatgga
      181 aatgattgag gaggaagatg tgggaaaaga aaatcaagcc atggtttgcc aaggtgccgt
      241 ggttttccga agaggatgga aaagaaataa acgatatctc acactgctca gtgatgtttt
      301 ggttgtctcc agtaaactaa ataagaagaa gtttaaggta aagcatgtca ttccattgac
      361 ttacctgtgg attggagatg aaacagacat attcaggaca gacaacagcc ctgcttccaa
      421 gaccatttac ctatattggc caatgggaaa tgctgttgtc accttccgtt ccatggaaga
      481 gaccatttgg tggaacttct ttctacaaag atccattcga gatgcgaaga agcagaacaa
      541 aatagattta tccctgcaga tatccactga ggacattgca cgctgtgaca ctcctctata
      601 tgtaaaagct acaaacttcg atacagtgaa tgacataatg agcaagttac taccaatgat
      661 gagaaaacat aacattgaag attatcaact gtggttctgt cctcgccctg gggaagctcc
      721 aagagcactc caaggaaatg agtatccaca tgacattata atgataaata ttcaaaagaa
      781 cttcagttca cgggacttaa ggcattttac atctttccct tccctacctg ggctgatcat
      841 gaaatatcta aactctgatg cacaggggca attcatctta aggcccagaa actcagccag
      901 aagccaacag caaaaaaata tgaaggaaaa gactcttaag aaacaaagaa cttctacatc
      961 atcgtggtgg cacaggagct gtgagcccca cccagaccaa gtatgcacca ccccaaaagt
     1021 taataataga ggaaaactgt ttggaagaga actcagttcc atttgtaagg atggcaacct
     1081 gcccttggca attctggaca tgctgtccct actaaaaagg gaagggccca caaccgaggg
     1141 tgtctttata atacatccga gtataacaat gtgccaaaca ataaaagaca aattggattc
     1201 agaagaagag gtggacatga acaagctatc agtgcatgtc gtgtcgtgga tctttaagga
     1261 ctttctacaa aacattgaag gaagtctgat gacttcaaaa ctgtatgatg agtggattgc
     1321 tgtaaccaaa aaagtcgatg acgaagagaa attagctgca gtgcagagcc ttttagataa
     1381 actgccatct gcaaatgctg tgcttctgag gcaaattttt caaatattat atgaaataaa
     1441 aagtaattct tctgttaatg agatgtcttc ttacaatcta tctgttggga tagctccatg
     1501 tctcttattc atgcccagtt actgcaataa cggagggaca aatgacattc ccataaagat
     1561 ttctctggta acatttatga tcgaaaacac tccaaaaatt tttggagagg acgtggttgc
     1621 agtgtcatat gaaacatccc taactcatcc tcccggagca aagtcctcat gttcccctga
     1681 cacttcagca aataccagaa acgtgaagca aaccaatcgt ggactcagca gctgccccac
     1741 tgagaggaca tgccctcctg actataatgc actgccagga agtccagctg cccctcttcc
     1801 ctgtgaagac attctagatt cagagaaaag tgaaggaaat gtatatacca accaagcaat
     1861 acctttgctt agtctaccac aagcaccaaa gaaatgtttg tttggcaaat ctcttgtgag
     1921 aatttttgaa ggcaaaagcc tgcctactcc aatatttgat atgttttcca taattgcaga
     1981 gaagggacaa gattctgatc atatatttaa tacggtatct gaaatttcac actggtccct
     2041 gagggacagg attgaaaatg acgaacacat aaactggcag gaagaagacg ttctagttat
     2101 agcatccgta ttaatggact tcattagtaa cattaaagga agcttactta cttctgattt
     2161 atatgaagat tggcttaccg tcatggatga aggaactctg tttggaagaa ttactgccat
     2221 ccaaagactt acacgtcaga tgcccgaaca aaacttcctt cttctacaat atgtcatttg
     2281 tgtattagta atgataagtg actcttcgat gaataattta gactctcaca cattatctct
     2341 ccgcatagct ccgtctgtgc tatgtggtca gcctgcaagt gacgcactat atggggattc
     2401 tgcctcaaga aagatatctg ttataaaaat gatgattgac cactaccttg aaatatttgg
     2461 aaatgataat ctattttcta aacatattga cgaaaggtct gatgatctaa agatgtatat
     2521 agatttaatc ttctctaagg gcaaatctcc tattatgaaa aaagtcatag ttggccccaa
     2581 tgggacaacc tgcagtaatg atgaaaaagt aaatatttca aatgctgctc tgcaggaaga
     2641 atttcctaca ggttcagaga aacatgaaca cgatgtatct accattccct cagtactgtc
     2701 tccaaatcga ctacgaccta ggaagaaaag tttgtttggc caacctctta caagtatttt
     2761 tgaagacaat aagctgccta cttcaatact agacatgata tctataattg cagcaaaagg
     2821 acaaagttct gatcaattat tcagaactat atctgaaaat tcccagtgtt ccctgaggga
     2881 caagattgac acagaacaac ctatcaactg gaatgacgaa tgtgtgctgg ttgtagcttc
     2941 agtcttaaag gactttatta caaatataga tggaagccta cttacttaca atttatatga
     3001 aaattggctt accgtcccag aagaagaaac tctggctgga caaattattg ccattcaaag
     3061 ccttctacaa cagataccag atccaaactt tatactactg aaatatctca tttgtctatt
     3121 agcaataata aaagactcac ccatgaataa gctagatact aaaaggctat cgatccgcct
     3181 tgctccacat gtcttatggg gttggacttc tagtgactca ttatttggga aagttgtctc
     3241 aagaaagata tctcttatgg aaattatgat tgacaactat atccaaatat ttgaaaatga
     3301 taatagatac tgtatccata ttgaaaaaag gtctgctgta ataaataaat ctgcagatat
     3361 cataaattct gatgtcaaat caactattat gaacaaaatc ataggtggac tcaatagaaa
     3421 aacctgttac aataatgaaa tttaaatatt tcatatgcag ctctgcagga aagtcctaca
     3481 ggtatgaaag gatttattta gtcatcaaat gaatggaagg acaatatcat tctctgattc
     3541 catatatttg ttataatcaa agcagcaatg aggtcacaaa cttagagcat gagaagtatt
     3601 ttaaacaaca atttcattaa attgtgctta aatacatgct atacatatac acatatatat
     3661 atagtcatat acttatgtac atctatagac atacagttat gtatgataga ctatttagcc
     3721 cctgtaagaa tcctacaata ttttcc
//
