LOCUS       NM_001109113             961 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 3 open reading frame
            62 (C8h3orf62), mRNA.
ACCESSION   NM_001109113 XM_001075026 XM_573957
VERSION     NM_001109113.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 961)
  AUTHORS   Girard,A., Sachidanandam,R., Hannon,G.J. and Carmell,M.A.
  TITLE     A germline-specific class of small RNAs binds mammalian Piwi
            proteins
  JOURNAL   Nature 442 (7099), 199-202 (2006)
   PUBMED   16751776
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Nov 10, 2022 this sequence version replaced NM_001109113.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.126494.1,
                                           SRR26360186.1846400.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-26                JAXUCZ010000008.1  117958583-117958608
            27-428              JAXUCZ010000008.1  117958980-117959381
            429-520             JAXUCZ010000008.1  117960908-117960999
            521-961             JAXUCZ010000008.1  117962697-117963137
FEATURES             Location/Qualifiers
     source          1..961
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..961
                     /gene="C8h3orf62"
                     /note="similar to human chromosome 3 open reading frame
                     62"
                     /db_xref="GeneID:498675"
                     /db_xref="RGD:1589651"
     exon            1..26
                     /gene="C8h3orf62"
                     /inference="alignment:Splign:2.1.0"
     exon            27..428
                     /gene="C8h3orf62"
                     /inference="alignment:Splign:2.1.0"
     CDS             31..786
                     /gene="C8h3orf62"
                     /codon_start=1
                     /product="uncharacterized protein C3orf62 homolog"
                     /protein_id="NP_001102583.1"
                     /db_xref="GeneID:498675"
                     /db_xref="RGD:1589651"
                     /translation="MSEKLRRCRKELTAAIDRAFEGVRHSQECTAQQRLDVPSLTSLP
                     VHRLLCRNPLAACPSAAPCPGTSCAPENENPAFGPHHIPVNAKPQPLYPKRKPLTSKE
                     NVLMHSSILARERQFWRAAGDGENWRKESLRKGMERELKADPHMPLSSSSQEVTQDLL
                     DMIDHTSIRTIEELAGKLEFENELNRVCGRCQDSPFKEEAWALLVDESPQKALDSDPG
                     SLKQALDDQNIVETVLDLEEDYNLMTSFKYQIE"
     exon            429..520
                     /gene="C8h3orf62"
                     /inference="alignment:Splign:2.1.0"
     exon            521..961
                     /gene="C8h3orf62"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggcactcgt gtgcggcaac ggctggggaa atgtctgaaa aactacgaag atgcagaaag
       61 gagctgactg ctgccataga ccgagccttt gaaggagtca ggcattctca ggagtgcact
      121 gcccagcaga ggctggacgt cccgtcgctc acctccctac cggtacacag gctcctctgc
      181 agaaacccac tggcagcttg cccctctgct gccccatgcc ctggcacctc atgtgctccc
      241 gagaatgaga accctgcctt tgggccacac catattccag ttaatgcaaa accccagcct
      301 ctatacccca aaagaaagcc tctgaccagc aaagaaaatg tcttgatgca ctcctccatt
      361 ctggcacgtg aaagacagtt ttggagagct gcgggagatg gggaaaactg gagaaaagag
      421 agtttaagga agggtatgga gagagagtta aaagctgacc cacatatgcc gctcagcagt
      481 tctagccaag aggtcacaca ggatctgcta gacatgattg accatacaag tatccgaact
      541 attgaagaac tggctggaaa actagaattt gaaaacgagt tgaaccgtgt gtgtggacgc
      601 tgccaggatt cacccttcaa ggaggaagcc tgggccctgc ttgtggatga gagtccgcag
      661 aaggctttgg attctgaccc cggtagcctc aagcaggctt tggatgatca gaacattgtg
      721 gagactgttc tggacttgga ggaagactac aacttgatga cctctttcaa ataccaaata
      781 gagtgaggag agtcagcagc cacagtggtt ctcacaaggg gttggcagag cctgaagcca
      841 cccctgtctt aatttctgct gaatcccatt ttgagctgag agcccaggtt ttaatattgt
      901 tattttgaaa tgtttggagt gttttggact tgacattttt taaagtgtgt tagaggctct
      961 a
//
