LOCUS       XM_056984758            4274 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to RalA binding protein 1
            (LOC304239), transcript variant X1, mRNA.
ACCESSION   XM_056984758
VERSION     XM_056984758.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_056984758.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4274
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4274
                     /gene="LOC304239"
                     /note="similar to RalA binding protein 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 1 EST, 14 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:304239"
                     /db_xref="RGD:1565198"
     CDS             318..4100
                     /gene="LOC304239"
                     /codon_start=1
                     /product="ralA-binding protein 1 isoform X1"
                     /protein_id="XP_056840738.1"
                     /db_xref="GeneID:304239"
                     /db_xref="RGD:1565198"
                     /translation="MDTTKEEDVGEENRTVVCQGAAVIQRGWKRKKQYLTLFNDILVV
                     SSKLNKKFKIKHVIPLAYLWIGDEVDAFRSDNTAASKSIYLYWPMGHVVATFRSMEQT
                     IWWYFFLQRSIREAKKHNKMGLPMQIFTEDIAGCDTPLYVTATNFDVVNDIISKLLPM
                     IRKHNIEDYQLWFCPGPGKAPRVLQGHEYPHDIRMINIQKNFSSRDLRNFTAFCSLHG
                     VIMKYLNADVHGKFILKPRNSARSQQQNNMKEKTFKKQRTSMTSQLDRGSVPHQDQVC
                     TTPPVKKGRKLFGRELSSICQDGILPAAILDMLYLLKKKGPTTTGVFLEPPSITLWQT
                     VKDKLDSEEEVDMNKQSVNVVAWIFKDFLQNIEGSLMTSKLYDEWIRVPEKVNDEEKL
                     AAVQSLLDKMPPENAALLRQLFCILYEIKSNCSVNEMSSYHLSVGLAPCLLFVPSFCN
                     NGVTNDIGKKISLVEFMIENSTKVFGEDLAAVGLGTSLYHPPGGKSSCSQNNATNIGN
                     IKETEHGLSSCPIGRTCTPGYNTLPKSPAASLPYEGLIDSQKHEGIVYTNPTVTSINP
                     PQAKQKCLFGKSLSGLLEDKTLPTPKLGFSMTESFLHPTSSPSEHRRAEHGSGLTWTP
                     SSEEISPTKFPGLYRTGEPLPPHDILHEPPDIVSDDEKDHGKKKGKFKKKEKRTEGYA
                     AFQEDSSGDEAENPSKMKRSKGIHVFKKPSFSKKKEKDFKIKEKPKEEKHKEEKHKEK
                     KCKVLMAADVVKEWKEKKKKKKPTQESEVPQTDAPSLRPIFGVPLADAVERTMMYDGI
                     RLPAVFRECVDYMEQHGMKCEGIYRGSGVKSKVDELKAAYDREESPNLEEYEPNTVAS
                     LLKQYLRDLPENLLTRELMPRFEEACGRTTETEKVQEFQRLLRELPEYNHLLLSWLIV
                     HMDHIIAKEIETKMNIQNISLVLSPTVQISNRVLYVLFTHVQELFGTVVLKQVTRPLR
                     WSNTATMPTLPETQTGIKEEIRRHEFLLNCLHRDLQRGIKDLSKEERLWEVQRILTAL
                     KRKLREAKRQECETKISQDIASLLKEDVSEEETSENEEDINILLAQENEILTEQEELL
                     AMGQFLRSQIASEKEKVHCLRAEIAEIQSHQHGRSETEEHSSDSEYDSKDEEELQIIL
                     EDLQRQNEELEINNNHLNQAVSEEREAIVELRVQLRLLQMQGAKSEQQLQEEEPERQG
                     DTGPLPCEGVPEVIAAKEQVKPSPSKDPKETDLNCPGPVHHTVSQSPLPVLPGSVL"
ORIGIN      
        1 aaatgttatt cattacaaca cttgtggttc cacctgtgta caaaaattat gtttaaaagc
       61 cacagggaga gtaaatgaaa tgcacgtgtc actttgccag atgacatgtg ccttagaata
      121 ttgacatcac aatggtcctt cagcctgaca actacagaat cctgagactt cagtagtttt
      181 ctagccactg tagtcaccag tttggtgtct agaggcagga aggcaaacga aaatttcaca
      241 ttgtttgata agttcttcat cgcaggcttt actaaaaagg tggagctctg catcaggaga
      301 attggttttt tttcaatatg gatacgacta aggaggaaga tgtaggagaa gaaaatcgaa
      361 ccgtggtttg ccaaggtgct gcggttatcc aaagaggctg gaaaagaaag aaacaatatc
      421 tgaccttgtt caatgacatt ttggtggtat ccagtaaact aaataaaaaa tttaagataa
      481 aacatgtcat tccattggct tacctgtgga ttggtgatga agtggacgca ttcaggtcag
      541 acaacactgc tgcttccaag tccatttacc tatactggcc gatgggacat gttgttgcca
      601 cctttcgttc catggaacag accatttggt ggtatttctt tctacaaaga tccattcgtg
      661 aagccaagaa acacaacaaa atgggacttc ccatgcagat attcactgag gacattgcag
      721 gctgtgacac tcctctgtat gtaacagcaa caaactttga tgtggtaaat gacataatca
      781 gcaagttact accaatgata agaaagcata acattgaaga ttaccaactg tggttctgtc
      841 ctggccctgg gaaagctcca agagtactcc aagggcatga gtatccacat gacattagaa
      901 tgataaatat tcaaaagaac ttcagttcac gggacttaag aaattttaca gctttctgtt
      961 ccctacatgg ggtaatcatg aaatacctaa atgctgatgt acatgggaaa ttcatcttga
     1021 agcccagaaa ctcagcaaga agccagcagc aaaacaatat gaaggaaaaa acttttaaga
     1081 aacaaagaac ttctatgacg tcgcagttgg acaggggctc tgtgccccac caggaccaag
     1141 tatgcaccac cccaccagtt aaaaagggaa gaaaactgtt tggaagagaa ctcagttcca
     1201 tttgtcagga tggcatcctg cccgcagcaa ttctggacat gctgtaccta ctaaaaaaga
     1261 aagggcccac aaccacgggt gtctttttag aacctccgag tataactttg tggcaaacag
     1321 taaaggacaa attggattcg gaagaggagg tggatatgaa caagcaatca gttaatgtag
     1381 tggcgtggat ctttaaggac ttcctccaaa acatcgaggg aagtctaatg acttcaaaac
     1441 tatatgatga gtggattcgt gtacccgaaa aggtcaatga tgaagagaaa ttagccgcag
     1501 tgcagagtct tttagataaa atgccacctg aaaatgcggc tcttctgagg caactttttt
     1561 gtatattata tgaaattaaa agtaactgtt ctgttaatga aatgtcttct taccacctat
     1621 ctgttgggtt agccccatgt ctcttattcg tgcccagctt ctgcaataat ggagtgacaa
     1681 atgatattgg caaaaagatt tctttagtag aatttatgat cgaaaattct acaaaagttt
     1741 ttggagaaga cctggctgca gtggggcttg gaacatcact atatcatcct cctggaggaa
     1801 agtcctcatg ttcccagaat aatgcaacaa atattggaaa cattaaggaa accgaacatg
     1861 gacttagcag ctgccccatt gggagaacat gcactcctgg ctataataca ctgccgaaaa
     1921 gtccagctgc ttctcttccc tatgaaggcc ttatagattc acaaaaacac gaaggcattg
     1981 tatatactaa cccaactgta acatctatta atccaccaca agcaaaacag aaatgtttgt
     2041 ttggcaaatc tctttcgggt cttttagaag acaaaacgtt gcctactcca aaacttggct
     2101 tcagcatgac cgagtccttc ctgcacccca ccagcagccc tagtgaacac cgccgggccg
     2161 agcatggcag cgggctgacc tggactccca gctccgagga gatcagccct acaaaatttc
     2221 ctggattgta ccggacgggt gagcctttgc ctccccatga catcctccac gagcctcctg
     2281 atatcgtgtc agatgatgag aaagaccatg gaaagaaaaa aggaaaattt aagaaaaagg
     2341 agaaaaggac tgaagggtac gctgccttcc aggaagacag ctctggagat gaagctgaaa
     2401 atccttccaa gatgaagagg tccaagggaa tccatgtgtt caaaaagccc agcttctcta
     2461 aaaagaagga aaaggatttt aaaatcaaag aaaagcccaa agaagaaaag cataaagagg
     2521 aaaagcataa agaaaagaaa tgtaaagtct tgatggcagc cgatgttgtt aaagagtgga
     2581 aggagaagaa gaaaaagaaa aagccaactc aggagtcaga ggtgcctcag acggacgccc
     2641 caagtctcag acccattttc ggcgttccct tggctgacgc agtagagagg accatgatgt
     2701 atgacggcat ccggctgcca gctgtcttcc gagagtgcgt ggactacatg gagcagcacg
     2761 gcatgaagtg tgaaggcatc taccgagggt caggagtcaa atcaaaggta gatgagctga
     2821 aagcagccta tgaccgagag gagtctccaa acttggaaga atatgaacct aacactgtag
     2881 ccagcttgct gaagcagtat ttgagagacc ttcccgagaa tttgcttacc agagagctta
     2941 tgccccgatt tgaagaggct tgtgggagga ccacagagac ggagaaagtg caagagttcc
     3001 agcgcttgct cagggaactg cccgagtata accaccttct gctttcctgg ctcattgtgc
     3061 acatggacca catcattgcg aaggagatag aaaccaagat gaacatccag aacatctctc
     3121 tagtgctgag cccaactgtc cagatcagca atcgggtcct gtatgtgctt ttcacacatg
     3181 tgcaagagct ctttggcacc gtggtcctga agcaagtaac aagacctctg cgttggtcca
     3241 acacggccac aatgcctaca ctgccagaga cccaaacagg catcaaggaa gagatcagga
     3301 gacatgagtt ccttttgaac tgtttacatc gagatctgca gcgcgggata aaggacttat
     3361 ctaaagaaga aagattatgg gaagtacaga ggattctgac tgccctcaag agaaagctga
     3421 gggaagctaa aagacaagag tgtgagacca agatttccca ggacatagcc agccttttga
     3481 aagaggatgt ttccgaagaa gaaacgagcg aaaatgagga ggacataaat atcctccttg
     3541 cccaggagaa tgagatcctg actgagcagg aggagctcct ggccatgggg cagtttctgc
     3601 gtagtcagat cgcctcggag aaagaaaagg tccactgcct ccgagctgag attgcggaga
     3661 tccagagtca ccagcatggc cgcagcgaga cagaggagca ctcttctgac agcgagtacg
     3721 acagcaagga tgaggaggag ctgcagatca ttctggaaga cttacagagg cagaatgaag
     3781 agttagaaat aaacaacaat cacttgaacc aagcagtcag tgaagagcgg gaggccatcg
     3841 ttgagctccg agtgcagctc cggttgctcc agatgcaggg agccaagtct gagcaacagc
     3901 tccaggagga ggagcccgag aggcaagggg acacaggccc actgccctgt gagggtgtcc
     3961 ctgaggtgat agcagccaag gagcaggtga agccctcgcc cagcaaagac ccgaaggaga
     4021 cggatctgaa ctgccccggc cctgtgcatc atactgtaag ccagagtcca ctgcctgtcc
     4081 tgcccggcag cgttctgtaa aggctctcag agacgctcac tcttgcacac gtctgactcc
     4141 gtgtcaggct caggtcctgg gagggtgaag tggtggacac tcggtggtgg ggggcttgca
     4201 gggaacacag gcatttccag atagtgtcag tttatttgaa aattaatttt ctttgataaa
     4261 aataactatt ttaa
//
