LOCUS       NM_001409117            1392 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus Spetex-2 protein like 1 (Spetex2l1), mRNA.
ACCESSION   NM_001409117 XM_006253276
VERSION     NM_001409117.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1392)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Jul 8, 2022 this sequence version replaced XM_006253276.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC100254.1, SRR26360181.2250274.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-138               JAXUCZ010000009.1  6409095-6409232
            139-298             JAXUCZ010000009.1  6409937-6410096
            299-430             JAXUCZ010000009.1  6411439-6411570
            431-614             JAXUCZ010000009.1  6412237-6412420
            615-1392            JAXUCZ010000009.1  6415956-6416733
FEATURES             Location/Qualifiers
     source          1..1392
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q11"
     gene            1..1392
                     /gene="Spetex2l1"
                     /note="Spetex-2 protein like 1"
                     /db_xref="GeneID:302192"
                     /db_xref="RGD:1562800"
     exon            1..138
                     /gene="Spetex2l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             12..620
                     /gene="Spetex2l1"
                     /codon_start=1
                     /product="uncharacterized protein LOC302192"
                     /protein_id="NP_001396046.1"
                     /db_xref="GeneID:302192"
                     /db_xref="RGD:1562800"
                     /translation="MSRRLLRLFRKESGDQGETTPRQEDNLLSSKKGRRKSFWGRLGF
                     GRKASSQNVISEQEKCLKELEELKLEIQKCQFERDELYQILDLYIYDEWDHRLDVELP
                     ILRSEHEMRMMAMQMMTNSISDAMERYKELIQVNNSYRIRHSQLLREQAQLKNKIQIL
                     LNEKREQLVEQTELPASSEEAKRLCEEAGMNICDPRAQQQQV"
     exon            139..298
                     /gene="Spetex2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            299..430
                     /gene="Spetex2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            431..614
                     /gene="Spetex2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            615..1392
                     /gene="Spetex2l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cacaagcagg catgtctcgc cggctgctca ggctatttcg gaaggaaagt ggagatcaag
       61 gagagaccac accaagacag gaagataacc tcctgtctag taaaaaagga aggaggaaat
      121 cattctgggg aaggcttggt tttggtagga aggcatcatc ccaaaatgtc atcagtgagc
      181 aagagaagtg tctaaaggaa ctggaggaac tcaaacttga aatccagaag tgtcaattcg
      241 agagggatga actttatcaa atcctggacc tttatatcta tgatgagtgg gaccacaggc
      301 tggatgtcga attgccaata cttcgatctg aacatgagat gagaatgatg gctatgcaaa
      361 tgatgaccaa ctcaataagt gatgccatgg agaggtacaa ggagctcata caagtgaaca
      421 attcctaccg catcaggcac tcccagctcc tgcgtgaaca agctcaattg aagaacaaaa
      481 tacagatttt gctgaatgag aagagagaac agctggtgga gcagactgaa ctgccagcat
      541 cctctgagga ggcaaagaga ctctgtgaag aggccggaat gaacatctgt gaccccagag
      601 cccagcaaca gcaggtctaa aattctccag cagaaacttg aacatgacac aggccaggac
      661 aagtctccct tgaagagaag tgctacagga ggagaactaa gtgtgcacag caaatacacc
      721 actattgcat ctcatctgta atgtccatag caattgtgga ctgcattttc ctcctttagt
      781 ttgatctctt tggattgaat agtccttact ttcatctcgc ttctccccag caagagtgca
      841 catttggaga gactcagagc tatcaagacc tgctgggcat ccaggaagag tctccatagg
      901 taactttgta cttgtcctga tggtcatcca gaagtgtttc ccagagatca gtccacaaca
      961 ttggaaagac tttgagtcac agactgtcat atatcttata ctcagcagtg gacagccttt
     1021 tccttcatac cccccactcc aacaaagaga cctccttaca ttcctctagg aaagattaat
     1081 cccatcagta actgctttcc tactatattt ccaaagccag ccataggcta taagtctgtt
     1141 ctgcaaaatg agcagcaaaa gaatgctgag cacaattcct ctgtttagat tttggtttga
     1201 gttttgatta ttttggttac ttagtttcct tctattcatt tgaagttttg ttatttattt
     1261 gttgttgttt ttttcttgca attgatttgc tagtttgata aggatataga ctgtatgtat
     1321 ttactacctg catctggtta ctatcgagta aattggatgt attctggtga ataaaagagt
     1381 aatctcaaac ta
//
