LOCUS       XM_017595247            1083 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Ly6-B antigen gene
            (LOC300024), transcript variant X1, mRNA.
ACCESSION   XM_017595247
VERSION     XM_017595247.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017595247.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017595247.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1083
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1083
                     /gene="LOC300024"
                     /note="similar to Ly6-B antigen gene; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 13 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 55 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:300024"
                     /db_xref="RGD:1586182"
     CDS             282..737
                     /gene="LOC300024"
                     /codon_start=1
                     /product="lymphocyte antigen 6B-like isoform X1"
                     /protein_id="XP_017450736.1"
                     /db_xref="GeneID:300024"
                     /db_xref="RGD:1586182"
                     /translation="MNSSCAIKSCVLILLLPLLCAERAQGLNCYNCTMIPFGNTCSST
                     ATCSYPDGVCAIQVAEVVMGSVRLKVKDHICLPVCPTSSQTAEILGTVVDMKISCCNT
                     DLCNAAGPTGGSTWTMARVLLFSLGSVLLQILLEGSSKAPPPLSFYPYV"
ORIGIN      
        1 gcacagggaa gaacctcctg atagggctgt gggaggcagt ttggggttag gaaggaaaag
       61 ctgggcaggt agtagataag agttatagac acacatctat tccatggaga aaactctgtg
      121 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg ttcgggggtt
      181 ggattggatg cctgagctgc gtgggagccc tgagacgtga ttggaagtct cttaactggg
      241 tgcaatttcc aaggttttct ctgtgcactc attctctgag gatgaacagt tcttgcgcta
      301 taaagtcgtg tgtgctcatt cttctcctgc ccctactgtg tgcagaaaga gctcaggggc
      361 taaactgcta caattgcacg atgatcccat ttggtaatac ctgctcatca actgctacct
      421 gctcctaccc tgatggagtc tgtgctattc aggtggcaga agttgtcatg ggctctgtaa
      481 gactgaaagt aaaggaccat atttgccttc ccgtctgccc aacgagttct caaactgctg
      541 agatcctggg tactgttgtc gacatgaaga tttcctgttg caatacagat ctttgcaacg
      601 cagcagggcc cactggaggc agcacctgga ccatggcaag ggtgcttctg ttcagcctgg
      661 gctccgtcct cctgcagatc ttgcttgagg gctcctccaa ggccccgcca cccttgtcct
      721 tttatcctta tgtgtaatca ctcctccctg gagccctcta gtgataaatt ctgagtaata
      781 gaaactctga ggtgggggta gggtgtggaa caccttgttt caactctata gcccctgctg
      841 ggtaggtgcc ccactcccct ctctagggct ttcagatatg tagttcctgg aatgccatta
      901 tgttgtggtt tgctgctctt agccctggag gcacgtggac agcacgggga agatacagaa
      961 acccaaggca ctgtgccacc acctccatcc atacataaaa atctggggtc ctgcagggtt
     1021 cccacacatg cctctcaaca tccccctatt tgagtccaat aaactctctg ttctcccagc
     1081 caa
//
