LOCUS       NM_147137                546 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus cystatin domain containing 1 (Cstdc1), mRNA.
ACCESSION   NM_147137
VERSION     NM_147137.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 546)
  AUTHORS   Li,Y., Friel,P.J., Robinson,M.O., McLean,D.J. and Griswold,M.D.
  TITLE     Identification and characterization of testis- and
            epididymis-specific genes: cystatin SC and cystatin TE-1
  JOURNAL   Biol Reprod 67 (6), 1872-1880 (2002)
   PUBMED   12444065
  REMARK    GeneRIF: unusual amino acid sequence and highly restricted
            expression suggests that cystatins SC and TE-1 play a very
            specialized role in the testis and epididymis
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On May 10, 2012 this sequence version replaced NM_147137.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF442205.2, SRR26360181.2850754.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-243               JAXUCZ010000003.1  156677861-156678103
            244-354             JAXUCZ010000003.1  156680834-156680944
            355-546             JAXUCZ010000003.1  156684390-156684581
FEATURES             Location/Qualifiers
     source          1..546
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q41"
     gene            1..546
                     /gene="Cstdc1"
                     /gene_synonym="Cst14"
                     /note="cystatin domain containing 1"
                     /db_xref="GeneID:257643"
                     /db_xref="RGD:708555"
     exon            1..243
                     /gene="Cstdc1"
                     /gene_synonym="Cst14"
                     /inference="alignment:Splign:2.1.0"
     CDS             28..435
                     /gene="Cstdc1"
                     /gene_synonym="Cst14"
                     /note="cystatin SC"
                     /codon_start=1
                     /product="cystatin-14"
                     /protein_id="NP_671478.2"
                     /db_xref="GeneID:257643"
                     /db_xref="RGD:708555"
                     /translation="MLKTVMLWKMPMLVGLIVLGTHMWTIDKEVLDVTKDLDYFVASV
                     EFAVAQFNDNNSEENTYRLLEVGRAQKKTWTMIFLMDLEMGRTICKKHDENIHNCPLL
                     QGSGEKKVHCVFQVDARPWFSHFTVLTSTCVPT"
     exon            244..354
                     /gene="Cstdc1"
                     /gene_synonym="Cst14"
                     /inference="alignment:Splign:2.1.0"
     exon            355..546
                     /gene="Cstdc1"
                     /gene_synonym="Cst14"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acccttgtga ccccagtccc taggctgatg ctaaagacag tcatgttgtg gaagatgccc
       61 atgcttgtag gactgattgt gttaggcacc catatgtgga ccattgacaa agaagtttta
      121 gatgttacta aggatctaga ttattttgtg gcatcagtgg agtttgctgt ggctcagttc
      181 aatgacaaca actcagaaga gaatacatac aggttgctag aagttgggag agcccagaaa
      241 aagacatgga cgatgatttt tttaatggat ttggagatgg gccgcacgat ttgtaagaaa
      301 catgatgaaa atatccataa ttgcccattg ctacaaggct cgggagaaaa gaaggtgcac
      361 tgtgttttcc aagtagatgc acgaccttgg ttttcccact tcacagtcct gactagcacc
      421 tgtgtgccga cataagcaga ggggaggggc tttggctacg tattgttttc tcccttcctc
      481 tggtgtatga ccatctgtag cccaaggtct gtgtagtgct aatgcaatta aaagcatctc
      541 acagca
//
