LOCUS       NM_031537               1602 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus LY6/PLAUR domain containing 8 like 1 (Lypd8l1),
            mRNA.
ACCESSION   NM_031537
VERSION     NM_031537.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   West,A.R. and Oates,P.S.
  TITLE     Subcellular location of heme oxygenase 1 and 2 and divalent metal
            transporter 1 in relation to endocytotic markers during heme iron
            absorption
  JOURNAL   J Gastroenterol Hepatol 23 (1), 150-158 (2008)
   PUBMED   17614955
  REMARK    GeneRIF: The lack of translocation of DMT1 with heme dosing
            suggests another protein may be present to transport iron released
            from heme.
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Becker,K.G., Barnes,K.C., Bright,T.J. and Wang,S.A.
  TITLE     The genetic association database
  JOURNAL   Nat Genet 36 (5), 431-432 (2004)
   PUBMED   15118671
REFERENCE   3  (bases 1 to 1602)
  AUTHORS   Noel,L.S., Champion,B.R., Holley,C.L., Simmons,C.J., Morris,D.C.,
            Payne,J.A., Lean,J.M., Chambers,T.J., Zaman,G., Lanyon,L.E.,
            Suva,L.J. and Miller,L.R.
  TITLE     RoBo-1, a novel member of the urokinase plasminogen activator
            receptor/CD59/Ly-6/snake toxin family selectively expressed in rat
            bone and growth plate cartilage
  JOURNAL   J Biol Chem 273 (7), 3878-3883 (1998)
   PUBMED   9461570
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Nov 26, 2020 this sequence version replaced NM_031537.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF041083.1, SRR22582416.1619869.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06621351, SAMN06680412
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-93                JAXUCZ010000010.1  43115979-43116071
            94-183              JAXUCZ010000010.1  43117891-43117980
            184-300             JAXUCZ010000010.1  43118182-43118298
            301-453             JAXUCZ010000010.1  43118750-43118902
            454-582             JAXUCZ010000010.1  43119615-43119743
            583-715             JAXUCZ010000010.1  43123127-43123259
            716-1602            JAXUCZ010000010.1  43123460-43124346
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q22"
     gene            1..1602
                     /gene="Lypd8l1"
                     /gene_synonym="DMT-1"
                     /note="LY6/PLAUR domain containing 8 like 1"
                     /db_xref="GeneID:24906"
                     /db_xref="RGD:3683"
     exon            1..93
                     /gene="Lypd8l1"
                     /gene_synonym="DMT-1"
                     /inference="alignment:Splign:2.1.0"
     exon            94..183
                     /gene="Lypd8l1"
                     /gene_synonym="DMT-1"
                     /inference="alignment:Splign:2.1.0"
     CDS             111..833
                     /gene="Lypd8l1"
                     /gene_synonym="DMT-1"
                     /note="divalent metal transporter-1; protein RoBo-1;
                     rodent bone protein"
                     /codon_start=1
                     /product="protein RoBo-1 precursor"
                     /protein_id="NP_113725.1"
                     /db_xref="GeneID:24906"
                     /db_xref="RGD:3683"
                     /translation="MSWFLVLKCLLTVCIISHLSVSSTESYGCIRKTCFGGRCLHNTT
                     RSCEFSKGCFSQLQEFAVPLLLLNRRVEQRGCSEDNCTELAFSATLGIDWMFSYNHQC
                     CYSEQCNNKPINVSPLSLQPNGVECPTCYSELGTCRPVSLKCTGAQTTCVNVTGQGIR
                     EDFIKIHAMGCATQTACNLKNVIILNNIKIDTSCVSGSPPLRYSPSLSTDQKTSSATA
                     PTLCLLAAVLPAIMVMESFSEL"
     exon            184..300
                     /gene="Lypd8l1"
                     /gene_synonym="DMT-1"
                     /inference="alignment:Splign:2.1.0"
     exon            301..453
                     /gene="Lypd8l1"
                     /gene_synonym="DMT-1"
                     /inference="alignment:Splign:2.1.0"
     exon            454..582
                     /gene="Lypd8l1"
                     /gene_synonym="DMT-1"
                     /inference="alignment:Splign:2.1.0"
     exon            583..715
                     /gene="Lypd8l1"
                     /gene_synonym="DMT-1"
                     /inference="alignment:Splign:2.1.0"
     exon            716..1602
                     /gene="Lypd8l1"
                     /gene_synonym="DMT-1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tatttctgac tggcctgctg tgcagaatct agaccactgg cagtgggtga cagcccagtt
       61 gaggttaatc gaagtctcgt cgcaggctct gcttggtctt gggagttgct atgtcctggt
      121 tcttggtcct gaagtgcctc cttactgtct gcatcatctc tcacttatct gtcagctcta
      181 cagagagtta tggttgtata agaaaaacat gctttggtgg aagatgttta cataatacta
      241 ctagatcttg tgaattctcc aaaggttgtt tctcccaact gcaggaattt gcagtcccac
      301 tacttctatt aaaccgaaga gttgagcaga gaggctgttc tgaagacaat tgtactgaac
      361 tagcattctc ggcaacactg gggattgatt ggatgtttag ttataaccat caatgctgct
      421 acagtgaaca gtgcaacaac aagcccatta atgtgtctcc attgtcttta caacccaatg
      481 gtgttgaatg tccaacctgc tacagtgaac ttggcacgtg taggccagtc tccctaaagt
      541 gcacaggggc acagacgacg tgtgttaatg tcactggcca aggaattagg gaggacttca
      601 ttaagataca cgccatgggc tgtgcaaccc agactgcctg caacttgaag aacgtgatca
      661 tcttgaataa tattaaaatc gatacctcct gtgtcagtgg gagcccccca ctcaggtact
      721 ccccctctct cagcacggat caaaagacga gctcagcaac tgctcccaca ctgtgcctgc
      781 ttgctgctgt gctccctgcc atcatggtca tggagtcatt ctctgaactg tgaacgctca
      841 gtaaactctt tcttttggaa atttccttgg tcatggcgtc ttcacagcaa tagaaaagaa
      901 actaagacat catttctgga aaagtagtag catcaaaacc ccctttcaat aagaatagca
      961 agaaccagaa ccggctaaag tgatctcatt ttaatttgat catttctata aagatcttgc
     1021 cttgggctgg agagatggct cagtggttaa gagcactgac tgcttttcca gaggtcctga
     1081 gttcaattcc cagcaaccac agggtggctc acagttatct gtagtgggat cagatgtcct
     1141 cttctggtat gtctgaagac aacaacagtg tacccacata tataatcttg tcttgccaac
     1201 ttgacacaaa ccagggtcac ctgggaagag ggaacctcaa cagagaaaaa tgcctccatc
     1261 agattggttt gtagaaaaat tcgtggagca tttccttgat tgatgtttga tgtgggacca
     1321 agcccactat gggcagtacc atccctaggc aagtggtcct gggaggaatg agaaaggagg
     1381 acatgcctag caagcacaag gccctgggtt cggtctccag ctccaaaaaa aaaaaaaaaa
     1441 aaaaaagaaa gaaaggagga caaacataag cctgaggagc cagtcagtaa gcagtgcacc
     1501 tccatgatac tacatttcct gtctccaagt tcctaccttg agatcctgcc ctggctttcc
     1561 tccacggtgt aacctgtaag ataaaataaa gactttcctt cc
//
