LOCUS       NM_001421478            3526 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus uncharacterized LOC130062809 (LOC130062809),
            mRNA.
ACCESSION   NM_001421478
VERSION     NM_001421478.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3526)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3526)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.2791.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-587               JAXUCZ010000001.1  103049072-103049658 c
            588-689             JAXUCZ010000001.1  103048275-103048376 c
            690-980             JAXUCZ010000001.1  103046076-103046366 c
            981-1262            JAXUCZ010000001.1  103044365-103044646 c
            1263-1544           JAXUCZ010000001.1  103043274-103043555 c
            1545-1647           JAXUCZ010000001.1  103043033-103043135 c
            1648-1781           JAXUCZ010000001.1  103040537-103040670 c
            1782-3526           JAXUCZ010000001.1  103037371-103039115 c
FEATURES             Location/Qualifiers
     source          1..3526
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..3526
                     /gene="LOC130062809"
                     /note="uncharacterized LOC130062809"
                     /db_xref="GeneID:130062809"
                     /db_xref="RGD:329845492"
     exon            1..587
                     /gene="LOC130062809"
                     /inference="alignment:Splign:2.1.0"
     exon            588..689
                     /gene="LOC130062809"
                     /inference="alignment:Splign:2.1.0"
     CDS             650..1759
                     /gene="LOC130062809"
                     /codon_start=1
                     /product="uncharacterized LOC130062809 precursor"
                     /protein_id="NP_001408407.1"
                     /db_xref="GeneID:130062809"
                     /db_xref="RGD:329845492"
                     /translation="MLWGLRSLLLLHLGFLSPVLVDTKKTAVEDGLCSTVPCVIEFSK
                     APLRKPMIVSYRLNENISFHAGTSQPRGPVADLSTEEVEYCILLTHNMLGRKNMTYSL
                     YVGLGAQKDLTQKQELHIPGSSMAGEPVSLTCTIHSTCQESKALFLSWKGPIMSSSTT
                     VPINPSSALAIDPKPEDQDTTLRCHLKLSLDNLSSSKVVKLQLVSPARLLNYSCLLKR
                     TLTCSCSFHGIPTPSVQWWVGRTPVSVNSIDAILHMTSTTLESWTNSTIHLMWEPEII
                     KSLRCEGKNQYGVHASGIFLIPDKSSVSSVFLRGLIQGIVYGAIASALFFFFLVVLGM
                     KILNWWEENQTCKNEEAPTLKKPVWGGAKPAEVGS"
     exon            690..980
                     /gene="LOC130062809"
                     /inference="alignment:Splign:2.1.0"
     exon            981..1262
                     /gene="LOC130062809"
                     /inference="alignment:Splign:2.1.0"
     exon            1263..1544
                     /gene="LOC130062809"
                     /inference="alignment:Splign:2.1.0"
     exon            1545..1647
                     /gene="LOC130062809"
                     /inference="alignment:Splign:2.1.0"
     exon            1648..1781
                     /gene="LOC130062809"
                     /inference="alignment:Splign:2.1.0"
     exon            1782..3526
                     /gene="LOC130062809"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagaagtgag tgtgtctgag ctggtcagtt aaggttcctc aaccttagtc cctcccagtc
       61 tacgcaacgt cattcctccc gtgggttcat cgggtgggca ttgtgtcctt gaatcagccc
      121 agtttgcccc ctagaaccta acttccccag gcagtgtcta taattgtaag tcagcccctc
      181 accggatgct ttctgctaag cttctctgac ccaagggaaa gaatgcccag gagcccggag
      241 ccctaggaaa ccaagaccaa gaggtagaat tggagaagaa attgatcatt tagagggagg
      301 gccaaaagtt gctgttggaa tcggagagac ggcatatcac ttaagagtgc ttacagctct
      361 tactgaggac tggagtttcg ttcccaagtc agatgactca caactgcctg taacttcagc
      421 tccagaggat ccagtggttt tttctggtct ccactggcgt ctaaagaaga acaggagtat
      481 caggaggtca aagccagata ggactacaga ggggattgta ggtcagcctc ggccacagat
      541 tgagactgga caaacaaaag agaaccagga cagttccgag tttacagggc attctgtctg
      601 tggtcagagt cagcagcagg aaccatcctt gttttctctt gtctctgaga tgctgtgggg
      661 gctcagatcc ctacttctgc tgcatttggg gttcctttct ccagttttgg ttgataccaa
      721 gaagacagca gtggaagatg gtctatgcag tacagtccct tgtgtgattg aattttccaa
      781 ggcgcctctc agaaaaccca tgattgtgag ctataggctt aatgaaaata tcagcttcca
      841 tgctggcacc agccagccca ggggccccgt ggctgatctc tccacagagg aggtggaata
      901 ctgcatcctg ctgacccaca acatgctcgg aaggaaaaac atgacctact cgctctatgt
      961 aggtctagga gctcagaaag acctgaccca aaagcaagag cttcacatcc caggaagtag
     1021 tatggctgga gagcctgtgt ctttgacctg taccatccac agcacctgcc aagagtccaa
     1081 agctcttttt ctctcctgga aaggacccat tatgtcttct agcacaactg tccccatcaa
     1141 cccctcttca gcactggcca ttgaccccaa acctgaggac caggacacca ctctcagatg
     1201 ccacttaaag ctatccctag ataacctgtc cagcagtaaa gtagtcaagc tacaactggt
     1261 ctcacctgcc aggctgctga actactcctg tctgctgaag agaacactca cctgtagctg
     1321 ttccttccat gggatcccca caccttcagt gcagtggtgg gtgggaagga cccctgtgag
     1381 tgtgaatagc atagatgcca tcctgcacat gacctccacc acgctagaat cctggaccaa
     1441 cagcaccatt cacctcatgt gggagccaga aatcattaag agtcttcgct gtgaggggaa
     1501 gaaccaatat ggagtccatg cctctggaat cttcttgata ccagataaga gctccgtttc
     1561 cagcgtgttc ctgagaggac tcatccaggg gattgtgtat ggggccatcg catctgcttt
     1621 gttcttcttc ttcctcgttg tgctgggaat gaagatactt aattggtggg aggaaaatca
     1681 aacttgcaag aacgaagaag ccccaactct caagaaacca gtttggggag gagccaaacc
     1741 ggctgaagtc ggaagctgaa ggtgcactag ccttggctct gcagggctct ggagagagaa
     1801 agaagagtcc acatgggaac tgcagatgga ttgtggtgca tggcagactc ctctaacttg
     1861 acagacctgc agaagaacaa gccatcacct ctacctcaga ctccagagcc agagacctac
     1921 ggaccagctc tctctgtggc tggacaaacc cacccctctc caggctttcc ccttctcccc
     1981 taccccttcc tccttttcct ctccctctcc tttccatttc tctcctctcc tcttctcctc
     2041 cttttctttc cctcttcttc tctccccctc ttcttcctct ccccaccctc ccatctttct
     2101 ctccccctcc cacactcctc tcttcttccc acatttatac ccccaacttc tgctcttttt
     2161 ctctccatct ttttctttct cttccctctc ctctttctcc tcttcctctt ccccttcccc
     2221 tctttatttc ttcctcttcc tcttttctcc tcttgtccta acctccatgt agtctcttcc
     2281 agagtgagtg gcttggtcct tgcctatggc tcaagggcag gtatcagtgg gcccttggct
     2341 tcacccaaaa gtcatgcagg aaagggttgg ctagaagttc aagtatggga actgggcatt
     2401 cagggagaga ctaattgtag gacaggcaga gacaacaaga atgaatcaac cagctacctt
     2461 ctctgtatgc agtgagactt cctacaaaag agaagagtcc tgaatacaat gtcacattgc
     2521 tggccacagt tattctgctg tggctgggct ctcttagctt tactcactct ttgtatctat
     2581 ctcatgttct tggctcacac atcccatccc acctcatcac gaccatgctt tattctgtct
     2641 ctgatacttc acattacttt ggttgctttg taggttccat gcattttggg gtggatgtgg
     2701 acctcttttc agctgcccct tctctctttg agtcagggtt tcacatagcc caggctgtcc
     2761 cccaaattga tatgtagcca aggatgacct tgagctcttg attttcctgc tttcacctgc
     2821 cttgcgcagg ggtgacaagc atgcatctct aggtctggtt tatgtggtgc tgggatgggt
     2881 gcaagcactc cgctgactga gtcatatgcc tggccttctt ttgtcatttc tcactcttat
     2941 ctcccttcct tatctttctc atttaacaac cgtttccccg tgtacccaga acgtcactct
     3001 gcactgagta ctatgggaac acatggtcaa aatgactggt gacaatccag accaagacat
     3061 agatttattt agtaggagta aagcagaaga tgcttctgtt cccatctagg ctaggttacc
     3121 tttaggatct tctggactgc tttttttttt atatcaaatg atgactaagc cccccactgg
     3181 aatggttata atttagtcag cagcaggtgg ttggctctgg agaggaaatg acagaatgtc
     3241 aggcagacag ctgtgtgata tctcctattc ccacagataa agggagcaac tgagacttca
     3301 ttctgagacc taagtcaata cagcaacccc tgggacttgg tagggtcaac atatccacct
     3361 tatagagcag gataaggaga catgcatggt tcagaagtct ctaggaagag gggcatttct
     3421 ccttgtaatg tctctccagg gtccttctgc tacccatagc aagtcagaac tatgtaaaga
     3481 ctgtggctct gttagtgcaa atcagtcaat aaagggtgat atctta
//
