LOCUS       XM_039113340            2039 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus probable ATP-dependent RNA helicase
            DDX41 (LOC120103587), mRNA.
ACCESSION   XM_039113340
VERSION     XM_039113340.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039113340.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2039
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2039
                     /gene="LOC120103587"
                     /note="probable ATP-dependent RNA helicase DDX41; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 12 Proteins, and 90% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:120103587"
                     /db_xref="RGD:40990865"
     CDS             1..1866
                     /gene="LOC120103587"
                     /codon_start=1
                     /product="probable ATP-dependent RNA helicase DDX41"
                     /protein_id="XP_038969268.1"
                     /db_xref="GeneID:120103587"
                     /db_xref="RGD:40990865"
                     /translation="MEEWEPERKRARRNQATAGASHSEDEDEDYVPYVPLRQRRQLLL
                     QKLLQQRRKGAAEEEQQDSGSGSEPRGDEDNITLGPQSNVSLLDQHQRLKEKAEARKE
                     SAKEKQLKEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHE
                     RVRKKYHILVEGDGIPPPIKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGR
                     DMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGIL
                     EYYCRLLQEDSSPLLHCALCIGGVSLKEQMETMRHGVHIMVATPGRLMDLLQKKMVSL
                     DICRYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKP
                     VTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAKKKADVDAIHEY
                     LLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDM
                     PEEIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLH
                     CGDESMLDIGGEQGCAFCGGLGHRITDCPKLEAMQTKQVSNIGHKDYLAHSSMDF"
ORIGIN      
        1 atggaggagt gggaacccga gcggaagcga gctcgcagga accaggcgac tgcaggtgcg
       61 agccactcag aggatgaaga tgaggactac gtgccctacg tgcccttgcg gcagcgcagg
      121 cagcttctgc tccagaagct gctgcagcaa agacgcaagg gagctgcaga ggaagagcag
      181 caggacagtg gcagtggcag tgagccccga ggagacgagg acaacatcac gctgggtcct
      241 cagtccaatg tcagcctgct ggatcagcac cagcgcctca aagagaaggc tgaagcacgc
      301 aaggagtccg ccaaggaaaa gcaactgaag gaagaagaaa agattctgga gagtgtggct
      361 gaaggccgag ccttgatgtc agtgaaggaa atggccaaag gcattaccta cgacgatccg
      421 atcaaaacta gttggacacc cccgcgctat gtcctgagca tgtcagaaga gcggcacgag
      481 cgtgttcgga agaagtacca catcctggtg gaaggagacg gtatcccgcc acccatcaag
      541 agcttcaagg aaatgaagct ccctgcagct atccttcgag gcctgaagaa aaagggcatc
      601 ctccacccaa cacccattca gatccagggc atccctacca ttctgtctgg tcgggacatg
      661 attggcatcg ccttcacggg gtcaggcaag acactggtat tcacactgcc cgtcatcatg
      721 ttctgcctgg aacaagagaa gcggttgcct ttctccaagc gggaagggcc ttatggactc
      781 atcatctgcc cctcgcgaga gctggctcgg cagacccatg gcatcctgga gtattactgc
      841 cgtctgctgc aggaagacag ctcccctctc ctgcactgcg cgctctgtat cgggggcgtg
      901 tcgctgaagg agcagatgga gaccatgcga catggtgtgc acatcatggt agccacaccg
      961 ggccgcctca tggatttgct gcagaagaaa atggtcagcc tagacatctg ccgctacctg
     1021 gccctggatg aggctgaccg catgattgac atgggctttg agggtgacat ccgtaccatc
     1081 ttctcctact tcaagggcca gcggcagact ctgctcttca gtgccaccat gccgaagaag
     1141 attcagaact tcgccaagag cgccctggtc aagcctgtca ccatcaatgt tggtcgtgct
     1201 ggagcagcca gccttgacgt catccaggag gtggaatatg tgaaggagga agccaagatg
     1261 gtgtacctgc ttgagtgctt gcagaagacg cccccacctg tactcatctt tgcaaagaag
     1321 aaagcagatg tggatgccat tcacgaatac ctcctgctca aaggagttga ggctgtggcc
     1381 attcatgggg gcaaagacca ggaagagcgg accaaggcca ttgaggcatt ccgggaaggc
     1441 aagaaggacg tcttagtggc cacggacgtg gcctctaaag gcctagactt tcctgccatc
     1501 cagcacgtca tcaactatga catgcctgaa gaaatcgaga actatgtgca ccgaattggc
     1561 cgcactgggc gctcgggaaa cacaggcatc gccaccacct ttatcaacaa ggcctgcgat
     1621 gagtcagtgc tcatggacct caaagccttg ttgctggagg ccaagcagaa ggtaccacct
     1681 gttctgcaag tgctgcactg tggggatgag tccatgctgg acatcggagg agaacagggc
     1741 tgcgccttct gtggaggcct tggtcatcgc atcactgact gccccaaact cgaagctatg
     1801 cagaccaagc aggtcagcaa cattggccac aaggactacc tggcgcacag ctccatggac
     1861 ttctgagctt cccgcttctc cccaagagtc cagtcccagg acatcagcca tgtgcacacc
     1921 agccctcaag acaagaagcc agcctccttg gcccagctgg cctgggccac cccagtgccc
     1981 ccagaattac tatttttgtt ctcttcccca gctgccatta aagcacaatc cctttaaaa
//
