LOCUS       XM_039113101            5270 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus general transcription factor IIH
            subunit 5-like (LOC120103497), mRNA.
ACCESSION   XM_039113101
VERSION     XM_039113101.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039113101.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5270
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5270
                     /gene="LOC120103497"
                     /note="general transcription factor IIH subunit 5-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:120103497"
                     /db_xref="RGD:41355253"
     CDS             2123..2338
                     /gene="LOC120103497"
                     /codon_start=1
                     /product="general transcription factor IIH subunit 5-like"
                     /protein_id="XP_038969029.1"
                     /db_xref="GeneID:120103497"
                     /db_xref="RGD:41355253"
                     /translation="MANTLKGVLIECDSATKQFFLYLNESNALGKKFVIQDIDDTHAF
                     VIVELVNVLQEQVGELMDQNASCLTQK"
ORIGIN      
        1 ctccctctcc tccccctccc tctccttctc cccctcattc cctctctccc tatctccccc
       61 cacatctctg gcatggctga gatccttaca tgacacggtg ggatggagag agagagggca
      121 ggagaggcag catgttcgtc ttgcagcccc ttgccgcaca ccgtcttttt ctttgaaaat
      181 cgagtcactt cacaatcaca gaagttgccc tctgcaaaca cagggatatg gtcaacaaaa
      241 ctcttaacac gtccacatga gtgtaagccc agccattgcc tgctgggcga agcctggcaa
      301 ctcaggggaa ggaatgcagg ggctccttag tcacctctgg actcctgtct tctggtgggt
      361 gccaccttgc tttctctcta gagtttcttc catggccaaa ccatcttgta tccctgttga
      421 atcctctgat aggatgcagt gagcaggaca ggtcacttgc tcaaaagaat ctttgaaagc
      481 tccggtaaat acctgagaca cttaagctcg gcattcaagc ccacctgtgg tatggctctt
      541 tgtatcatac tcctgtgtcc gagtatgtgt acaggtccat gtctgtgtcc aagtgtgcac
      601 acacgtatgt gcagtgtgga tgctggaagt cagccttgga tgctatccct caggtaccat
      661 cagtaccccc tttgtttaga gataagggct ctcagtggct gggaactcac caagaatagg
      721 ctgggtggcc agggagcccc aggtatctgc ctatctctgc ctcccctgta taaactcgca
      781 caaccacttt gtccttccga ccattctata tccccaggca ggctctgcac ttccagactc
      841 gtgtctggtc accccacatg ctggtgcctg agtatagaat tgaagtccag agagaatgtt
      901 aattatcaaa gcctatgtaa atttgggccc cagttgccga ttccattttc aatctatgta
      961 gagtagccat gccacctgcc tggttcctgg acagacttct tgaatggtta agaggtagca
     1021 aaaggaactg aattgtgact agatctcagc agtaatatgc agtcacacac acacacacac
     1081 acacacacac acacacacac acacacacac acagcactgg gtcagcaata tgtaaatcag
     1141 gctaccttga gccccccagg cctcgctttg ttgttgttct gctgtcattc aactatctag
     1201 gtctctgctt tctgactggg acactttccc caatccaggg tgggaaggat gcatggattt
     1261 atgcacacag ggtcgctaag gtaaaggccc caccacctgc cattcctgcc aagtgctctg
     1321 ctctggcttt tcccatgacc cacaggttca gtaccatctt ggctcctgtc taagcagatt
     1381 agacggcatg agtccttcat tccttcagca atggctgagg atactgagca ggtctaagta
     1441 cctaaagaat agatacatgg gtaggacatg gctgcaagac tttgggtgag tgcagaatcc
     1501 agcctcagtt tcttcatcca gaaagtgggt gtggtcattg cactttccac ctacaattgc
     1561 ggtgaaggtt atgtgaggtg aaaagcctgg gacctcacca aggaactgct ggatactgaa
     1621 gcctttaccg tataatctgt ggtcagaatg aaaaccgtaa acactggagg aagggataca
     1681 gtctgaacta tgcttcaggg aaatgactca tagcatctaa taggaacttt agaatggctg
     1741 gcatgtatat attgtaagaa aatatattag atttggatca catgattcaa cctaggcagt
     1801 caacagtggc tgtctcatag tggaggggct gagaagatgg cggctgctca gttcatggac
     1861 tagatgtctc tgcaggcctg atttggcttt gaagacctgg agaactgcag gagagccact
     1921 ggtctttagt taacattaga agcctggaga agctgggttc tgaggtggca aaggaatgga
     1981 actgcagcag cagagtaggt gaagctgcca agaagagtgc aggcaaggga cggccctggt
     2041 tgtgtcaggg gcagaactct gctggctttg agcaccttca aacaaattct tgaagtcatc
     2101 tgcactgtct gcctgaggaa agatggccaa caccttaaaa ggagtgctta tagaatgtga
     2161 ttctgccacg aagcagttct ttctctactt gaatgagtcc aatgccttgg gaaagaagtt
     2221 cgtcattcaa gacattgatg acacacatgc ctttgtcatt gtggaactgg ttaatgtcct
     2281 ccaggagcaa gtaggggaac tgatggacca gaatgcctct tgtcttaccc agaagtgaga
     2341 gctctagtgt taagcacttg gcattcccaa ccagacacga gagagaggcc tgcttagtgt
     2401 ctcctggggt ttagacttgt tacgagcatt tggtgggaaa ggctgctgca gggtcattca
     2461 ctcagatgta agctcccaac tgattttgtt ggaccattaa aaaatatctt tttaaagaag
     2521 agagagagag agagagagag agagagagag agagagagag agagagagag agagagagcg
     2581 cgcgctcact gcagagaaca tggttctgct ctctggtacc tgtgtggtgg tttgcagcca
     2641 ttctcaactc ttgttccagg acacccaaca cctcttctgg cctccctggc caccaggcat
     2701 gtgcactcgt tgtgcacata catgcatgca ggcaaaagcg aaggcaaaca ggcacgaagc
     2761 aaagcttctt tccgtactca tttatctgag ctgccatcag aaggtgccac ctatgttagg
     2821 gtgactcttt ccactctttg gaatttggtg gagaaaattc ctcccaggag taccctacag
     2881 cttgcctttt agttgcttcc agatccagtc aggttgacaa ccaagactta ccgtcacaga
     2941 ggagacttac ggtctcaggt gtccactcag ctctctgtga cctctcccaa ccaacatttg
     3001 tagactgaag tatgtgtcat ctgggtactg agtgagggca cctggaaggg gacataaggg
     3061 agagctatca ggtgcattcc attcacagtc ttctcctgtc ccgaccgttt tacagggtct
     3121 tccctctcaa gggatgcctg gctagcaccc agtcttacag catagaattg agacatttgg
     3181 gggagattta aaatagaaca ttgtgtgtgt gtgtgtgtgt gtgtgtgtgc ttgaagtgtg
     3241 tggtcatatg tgccttgaca tgaatgtgga agtcaaagga caaccaagtc ttttctctcc
     3301 ttctgccttt atgtgagtcc agggaatcga acccacgtca ccaggtttgt gtggcaagct
     3361 cctttaccca ctgagtcatt tcccgagccc tggggaagat tttaatggga agaattaaga
     3421 tgagtcttag ctcaaatctg taccaaccag atgtcatagt atgagccaac catactagac
     3481 agaatagtgt ccaaccccag tgttgttatt accccgctct ccagggactg tgatgatgat
     3541 gtcttacatg gcaaaggggg tctgtgaatg tggttaggtt aaggaacctc agaaccttga
     3601 aaaatgccag ggtccagtgt atctacctgg aacctttgat ctgcctgttt gttttctttg
     3661 aggcaaggtc ttgtgtagtt tgggctggcc ttagtctaga taaatagttg gggttggcct
     3721 atagttggta ctattcccct gcctctactt ccaaccccga gaatgctgag gtcacaggcg
     3781 tgtgataaca aactcaggtc cactgaaact gaggagaccc tctgctgctg tgtctgcaga
     3841 gaccaggcta ctgacggcat gtgaggactc ccaggagcca gggaaggcaa gggagtcccg
     3901 agagtctcca gaagggaagg cagcaccaac acagcttagc actggctcag ggaggtccgt
     3961 gtggcctctg atctccagga atggtcagga aggagtccca gctcaggcac taggtctgtg
     4021 tggtgtgtga ggcagtcaag gaaaatgaat acagtgccca ggtgctgatg aggccaaaca
     4081 caggggactt gccaccattt tccaccttgg agagctcacc cagtgaggga gacagacaag
     4141 cggactcctt gccaccacat tgactgggga gttctctctg cctggggacc agagagacat
     4201 ggagcaggta agctagggtg tgtctgtagg ataggtagca ggttttattt gtgttgttgt
     4261 tgttgttgtt gtttttattt gctttaggag aaagggggaa agggaaatct aggctgagca
     4321 gacagtatgt gcaaagacac aaaggaagga ggaatatgat gtatttccac ctgcgaagac
     4381 agtcgccgtg gagccaggga ctggtggggc tgtgttcctg tgcccatcca tcctcgaatg
     4441 tcctggggga gagcaggagg tgggcagcgc tgggctctct gcagagagga ggatcttcct
     4501 ggaggtgtga gttccggtca ccagacgctc ccacctggct ctctccttgg aatcttgttt
     4561 tgtgctttag aaatggacat gaagggactg gggattgatt cagacagtaa aataccagcc
     4621 acaggagcta ggacctggat tcagagctcc agaagtcatt tagaaagcca ggagtggcag
     4681 tgcacccctg cagctcctgt gttctccgtg tgcctgcatg tgcatgcctg gtgagagatc
     4741 ctgcctcgga aaataaagat ggaagggcat ggaggacgcc tgacgctgac ctctgacctc
     4801 tgacctctga cctctgcgtg catagcatgc cttgccttag ggctatgatg aaacaccatg
     4861 aaccaaggct tacagaagaa actgtgtaac tgggggcttc cttacagctt cagggggtta
     4921 gtctatgatc ctcatggtgg caggcaggcg gggcagtaga tgggaactta catcatgatc
     4981 agcaggcatc gggcagagaa agaatgcaaa actgagtctg gtgtgagctt ttgaaggctc
     5041 aaagccaacc ccctgtggca tacctcctcc aacgaggcca cacctcctag tcattcctaa
     5101 acagactacc cactgggaac caaatattca aatatatgaa tctatagggg ccattcttat
     5161 taaaccacta acacacacac acacacacac acacacacac acacacacac acacaccaca
     5221 taaatatgca cataaacaga ttttttttta aaagtggata tgtttgtgcc
//
