LOCUS       XM_039111509            2316 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus HMG-Y-related protein A-like
            (LOC120103118), transcript variant X1, mRNA.
ACCESSION   XM_039111509
VERSION     XM_039111509.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2316
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2316
                     /gene="LOC120103118"
                     /note="HMG-Y-related protein A-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 long
                     SRA read, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 35 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:120103118"
                     /db_xref="RGD:41123726"
     CDS             757..1521
                     /gene="LOC120103118"
                     /codon_start=1
                     /product="translation initiation factor IF-2-like isoform
                     X1"
                     /protein_id="XP_038967437.1"
                     /db_xref="GeneID:120103118"
                     /db_xref="RGD:41123726"
                     /translation="MEEREVAWGLRSRHDPASGAGTNKAARFPGVNTQASATPSVRFR
                     QQSTAKRQPGWGAGVKALRRMRYSAAAGRSGLRRGDAGLPTPAPPPAARLGPARPKPP
                     LSPRPPPDSTRPEAGTWHTSRRTRTKTGPSRARNRLASRGPRAAAETATGSTRPGGGG
                     SRPARDNTASCLQCACARGSGRGAPTGDALGGAGCEQTLPAGNAILADGGVVRFGVLR
                     PSHTARILPLSHPCLCFFIFNLHTNSSIHQDSSSQI"
ORIGIN      
        1 tttacggaag catacaatgg tttggaaagg ctattaaaag aagtgccgtt tgtcctgcga
       61 ataatgtgtc tatttacatt taagttaaaa attcagttcc tcagtcatac caggtaagtt
      121 tcaagtactg tagctaaacc tcactaaaga gcaccactag gcagcacgga cataggtcgc
      181 tttcatcatc agtttccttg gacactctac acctgattca gcattcagac cctctgaaag
      241 atgtcacaag tggtcaacgg gtagtgtagc acagcctgcc cagcaccgga agaaactcat
      301 ttgcttctac ctcaggcttc aaggaaacag acccatgggc agacaaccac cacagagtag
      361 ctgcaaagac catggatgtg agaggttgcc ccttatcgag gacctagaaa aggcatctaa
      421 ggaaggatga ggtctgtgct gagtcatgaa gtttgggcac tggggacgag caaaattcca
      481 agcaaattaa tcgaactgat accagttctg aggtgagaaa tggcttggcc tatacaaggg
      541 aaaaacgccc ggcatcactg aggcataaac caaactgcaa ggctagaaat gagggcatga
      601 accaggggag aaagagaaac acctttaagg ctttaaaggt acttaggcgt taccctgaca
      661 gcagtgtgaa gcatgatggg ttgctgcaga aggtgcacag ggaagtggga gatcatatac
      721 ggcgggaaac cacagccctg agcatcttgc aaatctatgg aggagcgtga ggtggcgtgg
      781 ggattaagaa gcagacacga tcccgcgtct ggagctggga ccaacaaggc tgcaaggttt
      841 cctggtgtga acacacaggc gtctgccact ccaagtgtca gatttcgaca gcagtcaaca
      901 gcgaagcgtc agccgggatg gggtgcggga gtgaaggcgc tcaggagaat gagatactcc
      961 gctgccgcag gccggtcggg gctcaggaga ggcgacgccg ggctccccac acccgcgcct
     1021 cctcccgctg ccaggctcgg cccggcccga cccaagccgc ctctatctcc ccggccgccc
     1081 ccagactcca cacgcccgga agcgggcacg tggcatacct cgcggcggac ccgaaccaaa
     1141 accgggcctt ctcgagcccg gaaccgccta gcttcccgcg gcccccgggc ggcggcggag
     1201 acagccacag gaagcacccg cccaggaggc ggtggctctc gcccggcacg tgacaacaca
     1261 gccagctgcc tgcagtgcgc atgtgcgcgg ggaagcgggc ggggcgcgcc cacaggtgac
     1321 gccttgggtg gggctggctg tgagcagaca cttccagcag gtaacgcgat actggctgac
     1381 ggcggcgttg tgaggtttgg cgtcttgcgc ccttcacaca cggcaaggat tctaccactg
     1441 agccacccat gcctgtgctt cttcattttt aatctacaca ccaactcatc catccatcaa
     1501 gacagtagtt cacaaattta gccctgactg accaagaact tcctttataa accagaagag
     1561 gatcaaactc aaggatctgt ctgtctctgt cctccaaatt ctagaatcgc cagacttgga
     1621 cttgaaggca aatgccaccc cttgtaaccc ttgggcagtg attttctggt acttcttaaa
     1681 gttttctaca tctagcaaca gcacaggaca cacaatggat gctcagtagg gacttgttaa
     1741 atggcttgaa ggtatagcaa ggagcttcct gaagatgaca tacctttctg gctaccaact
     1801 ggacggcatc atcctcaaag gcctttaaat gcttcagtcg ggacactaag atttgtttca
     1861 gttggctgtg agagtagggt tggaaagaca tcctggtgag gccctgaaag agtcaaaatg
     1921 acaaatttca gggggaaaaa tcacttgcag gcacccaagt tccacataac aacctattca
     1981 ttccttccca tctctccttt cagttgctgt ctagttgact tgggtaccct gcaggacagt
     2041 agatatcaaa ctattctctt ttatattata agcttttatt ttcttagact ctttcaagga
     2101 gacagagata ctctaaagaa atgcatagct cccaccttcc cttaccatgt acttcacggt
     2161 ttgatgttgg tgcttcctga caaatcaacc atataagccc atgaaggcaa agaaagtctg
     2221 tctggctttc tgctttattc taagtaccta agacgtggaa gtggtacatg cctagatatt
     2281 tttaaaaagt aattaaactt ccagtacttt atggaa
//
