LOCUS       XM_039111498             336 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NADH dehydrogenase [ubiquinone] 1
            alpha subcomplex subunit 3-like (LOC120103106), mRNA.
ACCESSION   XM_039111498
VERSION     XM_039111498.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111498.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 35% of CDS bases
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-165               JACYVU010000162.1  66791475-66791639   c
            166-166             "N"                1-1
            167-186             JACYVU010000162.1  66791455-66791474   c
            187-187             "N"                1-1
            188-273             JACYVU010000162.1  66791369-66791454   c
            274-336             JACYVU010000162.1  66787837-66787899   c
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..336
                     /gene="LOC120103106"
                     /note="NADH dehydrogenase [ubiquinone] 1 alpha subcomplex
                     subunit 3-like; The sequence of the model RefSeq
                     transcript was modified relative to its source genomic
                     sequence to represent the inferred CDS: inserted 2 bases
                     in 2 codons; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 44% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:120103106"
                     /db_xref="RGD:41310584"
     CDS             1..336
                     /gene="LOC120103106"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 2 codons"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: NADH dehydrogenase
                     [ubiquinone] 1 alpha subcomplex subunit 3-like"
                     /protein_id="XP_038967426.1"
                     /db_xref="GeneID:120103106"
                     /db_xref="RGD:41310584"
                     /translation="MAARTSAFLKDAWAKEPVLVVSVTVWGLAVMINPYTKYASMINR
                     AIPYNYPVADVXHHPQEPXGPSLEWLKNLQMLLLMDSVPSLLPSNKDGGGSVLKPFRA
                     TMGISEAYS"
ORIGIN      
        1 atggctgcta gaacctccgc cttccttaag gatgcctggg cgaaggagcc ggtgctggtg
       61 gtgtccgtca ctgtctgggg cctcgctgta atgattaacc cctacaccaa gtatgctagc
      121 atgatcaaca gggccatacc ctacaactac ccagtggctg atgtgnctca ccatccacag
      181 gagcctnctg gtccaagctt ggaatggctc aagaacctgc aaatgcttct gctgatggat
      241 tcggtcccgt ccctgttgcc ctccaataaa gatggaggcg gcagtgttct gaaacccttc
      301 agagccacca tggggatctc tgaggcctat tcctga
//
