LOCUS       XM_039111492             877 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus atherin-like (LOC120103100), mRNA.
ACCESSION   XM_039111492
VERSION     XM_039111492.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 12% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..877
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..877
                     /gene="LOC120103100"
                     /note="atherin-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 89% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:120103100"
                     /db_xref="RGD:41292687"
     CDS             1..750
                     /gene="LOC120103100"
                     /codon_start=1
                     /product="atherin-like"
                     /protein_id="XP_038967420.1"
                     /db_xref="GeneID:120103100"
                     /db_xref="RGD:41292687"
                     /translation="MAAAGAASPRSPAPPAPGPAAAAGGGSARSGDRDPALSRLFRPR
                     QQQKQSGPPPPPPAGAGAGGGARPPGREGAPGACGPGSRLAKGACAARHAQGPASRSE
                     AGGGVRQDRARALGAEPRGRVRRAPARSPACPPAGPQAAPPVAPPVLFRQRSSLKSPS
                     KELDSVLDDLQAAALHFVLRLTSRTSSPPLPQMTSSLSHPWTPQAQPVLHSFLPPILH
                     TQSPQDRSTRQQGSMNPSESTISTAPSFFFL"
ORIGIN      
        1 atggcggcgg cgggggccgc ctcgccccgg tccccggcgc ctcccgctcc gggccccgcc
       61 gccgccgcgg gcggcggcag tgcccggtcc ggggacaggg acccggctct ctcacggctc
      121 ttccggcctc ggcaacaaca aaaacaatcc gggccgccgc cgccgccgcc agctggagcg
      181 ggagcgggag gcggcgcgcg cccgccgggc agggaggggg cgccaggcgc gtgcggtccg
      241 gggtcccggc tggcgaaggg ggcgtgcgca gcccggcacg cgcagggtcc agcgagcagg
      301 tccgaggcag ggggcggggt gcggcaggat cgagcgcgcg ccctgggggc cgaacccaga
      361 ggacgcgtca ggcgcgcgcc cgcccgctcg cccgcttgcc cgcccgcggg cccgcaggcc
      421 gctccgccgg tcgctccgcc ggtcctcttc aggcagaggt cttctcttaa gtcgccatcg
      481 aaagaactgg attcagtcct tgatgaccta caggcagcag ccctccactt cgtcctgaga
      541 ctcacctcaa gaacctcttc cccacctcta ccacagatga cctcttctct ctctcatccc
      601 tggacacctc aggcacagcc ggtccttcat tcattccttc ccccaatact acacacacag
      661 tcacctcaag acaggtcaac acgtcaacaa ggcagcatga atcccagcga gtccaccatc
      721 tctacagccc ccagcttctt tttcttataa ggaagatggc tcagggagta aaggtacttt
      781 ataacatgga caacctgagt tcgatcccca aggcagacat gacagaaggc aataactgac
      841 tccggaaagt tgtcctctga cctccgcacg agtgcca
//
