LOCUS       XM_039111465            1019 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SUMO-conjugating enzyme UBC9-like
            (LOC120103068), mRNA.
ACCESSION   XM_039111465
VERSION     XM_039111465.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111465.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 21% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1019
                     /gene="LOC120103068"
                     /note="SUMO-conjugating enzyme UBC9-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 long SRA reads, 19 Proteins, and 89% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:120103068"
                     /db_xref="RGD:41194899"
     CDS             1..492
                     /gene="LOC120103068"
                     /codon_start=1
                     /product="SUMO-conjugating enzyme UBC9-like"
                     /protein_id="XP_038967393.1"
                     /db_xref="GeneID:120103068"
                     /db_xref="RGD:41194899"
                     /translation="MGTEVSPKLSIMMEKEKHSTGLNLSLSTNHQVRHRSGQGTMNLM
                     NWECTIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPSLFHPNVYPSGTVCLSIL
                     EEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF
                     APS"
ORIGIN      
        1 atgggtaccg aggtatcccc caaactttca ataatgatgg agaaagagaa acatagcaca
       61 gggctgaatc tctctctttc caccaaccac caggtaagac atagaagtgg gcaagggacg
      121 atgaacctga tgaactggga gtgcactatc cctggaaaga aggggactcc gtgggaagga
      181 ggcttgttca agctacggat gcttttcaaa gatgactatc cgtcctcacc accaaaatgt
      241 aaatttgagc catcactgtt tcatccaaac gtgtatcctt ctggcacagt gtgcctgtcc
      301 atcctggagg aagacaagga ctggcggcca gctatcacga tcaaacagat cttattagga
      361 atacaagaac ttctaaatga accaaatatt caagacccag ctcaagcaga ggcctataca
      421 atttactgcc aaaacagagt ggaatatgag aaaagggtta gagcacaagc gaagaagttt
      481 gccccctcat aagcagcggc cccgggctcc atgacgagga agggattggc ttggcaagaa
      541 cttgtttaca gtcttttgca gatctaagtg gctccgtaca gttactagta gcctgggagg
      601 gttgagcagg cgccattttc catttccgcc actggcatat tcagtctttt gtatttttga
      661 ttattgagta aaacttgctt ttattttaat attgatgtca gtatttcaac tgctgtaaaa
      721 tgataaactt ttgtacttgg taagccccta ggagctagtt tcttcgtgtc gtgctcgctc
      781 ggatgcaggc atgcttcccg ctgttcagag ctctggcctc cagctggctg tatgacagaa
      841 ccacactgtc cccccttcct tccctaccct catccttctc agaaacctgg gctgttgctt
      901 atgagcctca gatccaaagt tggccagcat ctgcattctg caccacttcc tttgtgttta
      961 tatggcgttt tgtctgtgtt gctgtttaga ataaataaac tgtttatata aaaaaaaaa
//
