LOCUS       NM_001409478            2055 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus cytochrome P450, family 4, subfamily a,
            polypeptide 2 like 1 (Cyp4a2l1), mRNA.
ACCESSION   NM_001409478 XM_039111183
VERSION     NM_001409478.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2055)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jul 18, 2022 this sequence version replaced XM_039111183.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098705.1, SRR26643287.13994.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760400,
                                           SAMEA5760475 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-247               JAXUCZ010000005.1  134257580-134257826 c
            248-380             JAXUCZ010000005.1  134256488-134256620 c
            381-416             JAXUCZ010000005.1  134255761-134255796 c
            417-544             JAXUCZ010000005.1  134255185-134255312 c
            545-669             JAXUCZ010000005.1  134254211-134254335 c
            670-824             JAXUCZ010000005.1  134253690-134253844 c
            825-931             JAXUCZ010000005.1  134253193-134253299 c
            932-1122            JAXUCZ010000005.1  134252925-134253115 c
            1123-1256           JAXUCZ010000005.1  134252705-134252838 c
            1257-1321           JAXUCZ010000005.1  134250652-134250716 c
            1322-1398           JAXUCZ010000005.1  134250457-134250533 c
            1399-1595           JAXUCZ010000005.1  134247823-134248019 c
            1596-2055           JAXUCZ010000005.1  134247240-134247699 c
FEATURES             Location/Qualifiers
     source          1..2055
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q35"
     gene            1..2055
                     /gene="Cyp4a2l1"
                     /note="cytochrome P450, family 4, subfamily a, polypeptide
                     2 like 1"
                     /db_xref="GeneID:120102953"
                     /db_xref="RGD:41366809"
     exon            1..247
                     /gene="Cyp4a2l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             53..1567
                     /gene="Cyp4a2l1"
                     /EC_number="1.14.14.80"
                     /codon_start=1
                     /product="cytochrome P450, family 4, subfamily a,
                     polypeptide 2 like 1"
                     /protein_id="NP_001396407.1"
                     /db_xref="GeneID:120102953"
                     /db_xref="RGD:41366809"
                     /translation="MGFSVFSPTRSLDGVSGFFQGAFLLSLFLVLFKAVQFYLRRQWL
                     LKALEKFPSTPSHWLWGHNLKDREFQQVLTWVEKFPGACLQWLSGSTARVLLYDPDYV
                     KVVLGRSDPKPYQSLAPWIGYGLLLLNGKKWFQHRRMLTPAFHYDILKPYVKIMADSV
                     SIMLDKWEKLDDQDHPLEIFHYVSLMTLDTVMKCAFSHQGSVQLDVNSRSYTKAVEDL
                     NNLIFFRVRSAFYGNSIIYNMSSDGRLSRRACQIAHEHTDGVIKTRKAQLQNEEELQK
                     ARKKRHLDFLDILLFAKMEDGKSLSDEDLRAEVDTFMFEGHDTTASGISWVFYALATH
                     PEHQERCREEVQSILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVT
                     FPDGRSIPKGIRVTILIYGLHHNPSYWPNPKVFDPSRFSPDSPRHSHAYLPFSGGARN
                     CIGKQFAMNELKVAVALTLLRFELLPDPTRIPVPMPRLVLKSKNGIHLRLKKLR"
     exon            248..380
                     /gene="Cyp4a2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            381..416
                     /gene="Cyp4a2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            417..544
                     /gene="Cyp4a2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            545..669
                     /gene="Cyp4a2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            670..824
                     /gene="Cyp4a2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            825..931
                     /gene="Cyp4a2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            932..1122
                     /gene="Cyp4a2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1123..1256
                     /gene="Cyp4a2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1257..1321
                     /gene="Cyp4a2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1322..1398
                     /gene="Cyp4a2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1399..1595
                     /gene="Cyp4a2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1596..2055
                     /gene="Cyp4a2l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgcaggtgt tccacatgtt cagagaccct agtgatccag aagccattaa ccatgggttt
       61 ctctgtattt agccctacaa gatccctgga tggtgtctct gggttcttcc aaggggcctt
      121 cttgctcagt ctatttctgg tgctgttcaa ggcagtccaa ttctacttac gaaggcaatg
      181 gctgctcaag gccctcgaga agttcccatc cacgccttcc cactggcttt ggggccacaa
      241 cctgaaggac agagaattcc agcaggttct tacgtgggta gagaaattcc caggtgcctg
      301 cttacagtgg ctctcaggga gcacagcacg agtcctgctc tatgaccctg actatgtgaa
      361 ggtggttctg ggaagatcag atccaaagcc ttatcaatcc cttgctccct ggattggtta
      421 tggtttgctc ctgttgaatg gaaagaaatg gttccagcat cggcggatgt tgactccagc
      481 cttccactat gacatcctca aaccctatgt caaaatcatg gcggactctg tcagtataat
      541 gctagacaaa tgggagaagc ttgatgacca ggatcaccct ctagagatct tccactatgt
      601 ctccttgatg acactggaca ctgttatgaa gtgtgctttc agccaccagg gcagtgttca
      661 gttggatgta aattccaggt cctacaccaa ggctgttgag gatctaaaca acctgatttt
      721 ctttcgtgtg aggagtgcct tttatgggaa cagcatcatc tacaatatgt cctctgatgg
      781 ccgtttgtcc cgccgggcct gccagattgc tcatgagcac acagatggag tgatcaaaac
      841 gaggaaggct cagctgcaga atgaggaaga gcttcagaag gccaggaaga agaggcactt
      901 ggatttcctg gacatcctgt tgtttgccaa aatggaggat gggaagagct tgtcagatga
      961 ggacctgcgt gcagaggtgg acacattcat gtttgagggt catgacacca cagccagtgg
     1021 aatctcctgg gttttctatg ctctggccac ccaccctgag caccaagaga gatgcagaga
     1081 ggaggtgcag agcattctgg gtgatggaac ctctgtcaca tgggaccacc tggaccagat
     1141 gccttacacc accatgtgca tcaaggaggc cctgaggctc tactcacctg taccttctgt
     1201 gagtcgagag ctcagctccc ctgtcacctt cccagatgga cgttccatac ccaaaggtat
     1261 cagagtcaca attttaattt atggtcttca tcataaccca agttactggc caaacccaaa
     1321 ggtgtttgac ccctctagat tctcaccaga ttctcctcgc catagccatg cttatctgcc
     1381 attctcagga ggagcaagga actgcattgg gaaacaattt gccatgaatg agctgaaggt
     1441 ggctgtggcc ctgaccctgc ttcgctttga gttgctgcca gatcccacca ggatcccggt
     1501 ccccatgcca agacttgtgt tgaagtccaa gaatgggatc cacctgcgtc tcaagaagct
     1561 aagataattc tggtggagat aggacagctc caaagctttt actccagaca ccttcccagc
     1621 ttgtgtgtgt acccatttcc catctggttt cacctctgac cagccactga acctgccgcc
     1681 agcagcccgt cctccagcct gcttacccat catcatcatt ggactaacag agaaagatgt
     1741 attttagagg gaaactcttg cactttatct cccttcagtt ctcagagtct tgggacaatc
     1801 ggcatcatga attaaaatgt tcttagatat cacatgctgg gagaaaatta atcctaaaga
     1861 ttctggcacc agccagagga aggaaggtga ctcaaaagaa gagatttcta gatatttctg
     1921 attgtctcat ggtgaaatta atgtatgcct catcttttct atgaaataat agtactgatg
     1981 cagaacagta gatagaaatg aatagttttt actactttgg gccaaactgt aaataaatcc
     2041 atttcacttc attaa
//
