LOCUS       XM_039111128            3984 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC120102942
            (LOC120102942), mRNA.
ACCESSION   XM_039111128
VERSION     XM_039111128.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 35% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3984
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3984
                     /gene="LOC120102942"
                     /note="uncharacterized LOC120102942; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein, and 63% coverage of the annotated genomic feature
                     by RNAseq alignments"
                     /db_xref="GeneID:120102942"
                     /db_xref="RGD:41309144"
     CDS             1..3912
                     /gene="LOC120102942"
                     /codon_start=1
                     /product="uncharacterized protein LOC120102942"
                     /protein_id="XP_038967056.1"
                     /db_xref="GeneID:120102942"
                     /db_xref="RGD:41309144"
                     /translation="MGQSLTTPLSLTLDHWKDVRDRADEQGVEIKKGKWQTLCTSEWP
                     TFGAGWPVDGTFNKTVILQVKDQIFHKGLHGHPDQVPYIITWESLAFEPPSWVQPFVD
                     LSWPPTPSAPLAPLSTPSSLFPVRTKKESPKATSKPKPVLPEDSNSPLIDLLSEEPPP
                     YPVSTRSPQEAEARSSALPEAEPQSEAASSPIAGRLRHKRETVPDSTSQAFPLRQGTG
                     GQTQYWPFSAADIYNWKQHNPPFSKDPVALTELIESVLLTHQPTWDDCQQLLQALLTS
                     EEKQRVFLEARKHVLGDDGRPTQLPDALDDAFPLTRPNWDFNTVDGRGHLRLYRQLLL
                     AGLRGAARRPTNLAQVKQVLQGADETPSAFLERLKEAYRMYTPYDPDDPGQMTSVSMS
                     FIWQAAPDIRAKLQRLENLQVDTGAQHSVLTQAHGQLSDRTAWVQGATGGKTYRWTTD
                     RRVQLATGATERACRLGTESLLQTLGRLGYRASAKKAQICQTQVTYLGYQLKDGQRWL
                     TSARKQTVAGIPVPKSPRQLREFLGTAGFCRLWIPGYAEMAAPLYPLTKQGTLFQWGS
                     QQQEAFDNIKRALLSSPALGLPDVTKPFELFVDEKKGYAKGVLTQRLGPWKRPVAYLS
                     KKLDPVASGWPPCLRMVAAIALLTKDANKLTLGQPLTILAPHAVEALIKQPPDRWLSN
                     SRMTHYQAMLLNTEKVQFGPVVALNPATLLPLPEGAEPHDCLQILAETHGTRPDLMDQ
                     PLPNADYTWYTDGCSYVADGERRAGAAITTEDEVIWASALPAGTSAQRAELIALTQAL
                     KMAEGKRLNVYTDSRYAFATAHIHGEIYRRRGLLTSEGREIKNKAEILALLRALFLPK
                     GLSIIHCPGHQKGQSPEAWGNRLADASARKAAEKGQILTLVSADDHEQVSPWPYDSED
                     INLLKKMGAVYSPRLKRWVYKEKIVMPTKLTFELISYLHKLTHLGIKKMRTLLEREEV
                     GLYLLGQGQALREATENCKACAQVNPGKVKNGIGTRPRGHRPGIHWEIDFTEIRPGMY
                     GYRYLLVFVDTFSGWVEAFPTKHETAKVVTKKLLEEIFPRYGMPQVLGSDNGPAFVSR
                     VSQLVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLSKLTLATGTKDWVSLLPLVL
                     YRARNTPGSHGLTPFEIVYGAPPPFIDFFNSNIANLANSPSLETHLQALQLVQRDIWR
                     PLAVAYRDRLDQPTVPHPFQVGDLVWVRRDQIKNLEPRWKGPYTVLLTTPTALKVDGI
                     AAWIHSSHVKAAQPEEATAQQTWRAQRTRNPLKLRLTRVHS"
ORIGIN      
        1 atgggacagt ctttaacaac gccgttgagt cttactctcg accactggaa ggacgtccgg
       61 gaccgagcgg atgaacaagg ggtcgaaatt aagaagggga agtggcagac cctctgcact
      121 tctgagtggc caacttttgg agccggatgg ccggtggatg gtacttttaa caaaactgtt
      181 attttacagg tcaaggatca gatcttccat aaaggactac atggacatcc tgaccaggtg
      241 ccttacatta tcacctggga aagccttgcc tttgagcccc cttcttgggt gcaacctttt
      301 gtagacttaa gttggccccc tactccctca gccccacttg ctcctctctc aaccccttcc
      361 tctctctttc ctgtccggac caagaaggaa tctcctaaag ctacatccaa acctaagccg
      421 gtgcttccgg aagattctaa ctctcccctt atagatctct tatctgagga gcctcctcca
      481 taccctgtat ctaccaggtc acctcaggag gcagaagcaa gatcgtctgc cctcccagaa
      541 gctgaacccc agtctgaggc agcatcctct ccaatagcag ggagactacg ccataagcgg
      601 gaaacagtac cggattcgac ttcgcaggcc tttcccctta gacagggaac gggagggcag
      661 acccagtatt ggcctttttc cgcggccgat atttacaact ggaagcagca caacccccct
      721 ttttccaagg acccagtggc ccttactgaa ttaatagaat ctgttttact tacacatcag
      781 cccacttggg atgattgtca gcagctttta caggcccttt tgacttcgga ggagaaacag
      841 agggtgtttc tggaagccag gaagcatgtc ctgggggatg atgggcgtcc tactcagctg
      901 cctgatgcac tggatgatgc atttccactc acaaggccaa attgggattt caatacggtt
      961 gacggtaggg gacacctacg cctttaccgc cagttgcttt tagcgggtct ccgaggggct
     1021 gcccggcgcc caaccaattt ggctcaggtg aagcaggtat tacagggggc cgatgagacc
     1081 ccctcagctt tcttagaaag actaaaagag gcctatcgca tgtacacacc ctatgatcca
     1141 gatgacccag ggcagatgac gagtgtttct atgtccttca tctggcaggc tgcgccagat
     1201 atcagggcta agttacagag gttggaaaac ctacaggtgg acactggagc tcaacattca
     1261 gtcctcaccc aggctcatgg acagctcagt gaccgtacag cctgggtgca aggagccact
     1321 ggtggcaaga catatcgatg gacaacagac cgccgggttc agctggctac tggtgccacg
     1381 gagagggcat gccgtttggg gacagaatcc ctcctacaga ctctggggcg cctgggctat
     1441 agggcctcag cgaaaaaggc ccaaatatgt caaactcaag tcacttatct gggatatcag
     1501 ctgaaagatg gacagaggtg gttaacctca gctcgaaaac agactgtggc tggcatcccg
     1561 gttccaaaaa gcccccgtca gctgagggag ttcttaggca cggcaggatt ctgccgcctc
     1621 tggatcccgg gttacgccga gatggctgct cccctatacc cgcttactaa acaagggaca
     1681 ttgttccaat gggggtcaca acaacaagag gcttttgaca acatcaagcg tgccttattg
     1741 tcctcccctg cccttggcct cccagatgtt accaagcctt tcgagctgtt tgtagatgag
     1801 aagaaaggct atgcaaaagg agttcttaca caaagactag ggccctggaa gcggccagtg
     1861 gcctatttat caaagaagtt agaccccgtt gcttcaggat ggccaccttg cctgaggatg
     1921 gtagcagcaa ttgcactcct gactaaggat gctaataaac tgaccctagg acagcctctg
     1981 actattttgg cacctcatgc ggtagaggcc ctgataaaac aacctcctga ccgatggctc
     2041 tctaattccc gcatgactca ttaccaagct atgttgttaa acacggagaa ggtccagttt
     2101 ggtccagtag tggctttgaa tcctgctacc ctactcccct taccggaagg agctgagcca
     2161 catgactgcc tgcagatttt agcagaaaca catggaacca gaccagatct aatggaccag
     2221 cctcttccga atgctgacta cacctggtat acggatggct gcagttatgt tgcggatggg
     2281 gagcggaggg ccggagctgc catcaccacc gaagatgagg taatctgggc aagtgcctta
     2341 cctgcaggta cctccgctca acgagctgag ctcattgcct tgacacaggc tcttaagatg
     2401 gcagaaggta agagactaaa tgtatatact gacagccgtt atgcatttgc taccgcacat
     2461 attcatggtg aaatctaccg gagacgggga ttacttacat cagaaggaag agagatcaaa
     2521 aataaggctg aaatcttagc tctcttaagg gctctattcc taccaaaagg actgagtatc
     2581 atacattgtc caggacacca gaaaggacag agtccagaag cctggggaaa ccggctggcc
     2641 gacgcttcgg ctcgaaaggc tgcggagaaa ggacagatcc tgactctggt cagtgcagat
     2701 gaccatgagc aagtttcccc atggccatat gattcagagg acataaacct cctaaagaaa
     2761 atgggggcag tatactctcc tcgactaaaa agatgggtct ataaagaaaa gattgtcatg
     2821 cctacaaaat tgacttttga attaatatct tatttacata aactaactca cctgggaatc
     2881 aagaagatga gaactctcct ggagcgagag gaagtaggtc tttacctttt gggacagggt
     2941 caggccttgc gagaagcgac tgaaaactgt aaagcttgtg cccaagtgaa cccagggaag
     3001 gtgaaaaatg gtattgggac tcgtcccagg gggcatcgtc ctggcatcca ttgggagatt
     3061 gattttactg aaatcagacc aggcatgtat ggttacagat atctgctggt gtttgtggat
     3121 acattttcag gatgggtcga ggcctttccc accaaacatg agactgcaaa ggtagtcacc
     3181 aagaaacttc ttgaagagat ttttcccagg tatggtatgc cgcaagtcct gggatcggac
     3241 aacgggcccg ctttcgtttc ccgggtaagt cagttggtgg ccaaattact ggggattgat
     3301 tggaaattac attgtgcata cagaccccag agttcaggac aggtagagcg tatgaataga
     3361 acaattaagg agactttatc caaacttacg cttgcaactg gcacaaagga ttgggtttcc
     3421 ctcctcccct tagttcttta cagggcccgg aacacaccgg gctctcatgg gttgactcct
     3481 tttgagatag tatatggggc accaccccca tttattgatt tctttaattc caatattgct
     3541 aatcttgcta atagcccttc cctggaaacc catctacaag ctttgcagct cgtgcaaaga
     3601 gacatctgga gacctctagc tgtggcatac cgggacagac ttgatcagcc gactgtgcca
     3661 cacccgttcc aggtgggaga cctcgtatgg gtacgcagag accagattaa gaatcttgag
     3721 ccccggtgga aaggacccta cactgtcctc ctgacgacgc caaccgccct gaaggtggac
     3781 ggaattgctg cgtggatcca ctcttcacac gtcaaggcag cccaaccgga ggaagccacc
     3841 gcacagcaga catggagagc ccaacgcacc cggaacccct taaagctgcg actcacacgc
     3901 gtacactcct gacactaatc accctgagct tgtgctggag ggagggggtt gctggacaac
     3961 caagccctca ccaggttgtc aacc
//
