LOCUS       XM_039111076            2972 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus POU domain, class 4, transcription
            factor 1-like (LOC120102903), transcript variant X1, mRNA.
ACCESSION   XM_039111076
VERSION     XM_039111076.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2972
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2972
                     /gene="LOC120102903"
                     /note="POU domain, class 4, transcription factor 1-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 15 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:120102903"
                     /db_xref="RGD:41129082"
     CDS             1..630
                     /gene="LOC120102903"
                     /codon_start=1
                     /product="POU domain, class 4, transcription factor
                     1-like"
                     /protein_id="XP_038967004.1"
                     /db_xref="GeneID:120102903"
                     /db_xref="RGD:41129082"
                     /translation="MPRGVPTRLRGTAGRAVKAQTPGRGRGEEGRGRGDRRGGGGAAC
                     APPQSAASALSSAPACGRGHLRQGCCPPPGRRPPTPALPGLFPRAAAHEGGARRERRE
                     AASAAAPLPTRAERGRGGSHLPGGGAGAAGRAGRFCPRPRRPPAPPAAAEASQRLRAA
                     TATATAADVAAPLPRGSRSAPASAGPYQVLAQARVALPPQSVAAQELRA"
ORIGIN      
        1 atgcctcggg gtgtcccgac gcgcctgcga gggacagcag ggagggcggt taaagcgcaa
       61 accccaggga ggggccgcgg ggaggagggc agggggaggg gagaccgccg agggggaggg
      121 ggagccgcct gcgcgcctcc tcagagcgcg gcctcggccc tgagcagcgc cccggcctgc
      181 ggtcgcggcc acctgaggca gggatgctgc ccgccacccg gccgccggcc tcccacccca
      241 gcgctcccag ggcttttccc acgggccgca gcccacgagg gaggggcgcg gcgggagagg
      301 agggaggctg cgagcgcggc cgccccgctt cccacccgcg ccgagcgggg gcggggcggc
      361 tctcacctgc cgggcggtgg cgctggggct gcggggcgcg ctggccgctt ctgcccacgt
      421 ccacgccggc cacctgcgcc accagctgcc gcagaggcgt ctcaacggct ccgagctgca
      481 accgccaccg ccactgccgc cgatgtcgct gcgccgctcc cgcgcggctc ccgctcggcg
      541 cccgctagcg ctgggccgta ccaagtgctc gcccaggcac gggtggcgct gccgccgcag
      601 agcgtcgcgg ctcaggaact gagggcctga agcccctcga gctctcagac atgagcagaa
      661 ggagcccttt gtgtgatgtt gatttcttaa gaagagaaga aaaaaggtgg aggagcacaa
      721 cttaagtaat tacagaaaca gtggtcagct acatcatgga cccgaaagag cagaaaaagg
      781 tcagaaaggg aagtttttaa tcccaagtaa aaaatatcaa agcagcacct ggctgtcatt
      841 ttgtgtgtgt gtgtccctcc cattgttctc aactctgtta agtaaggcct tggaactcca
      901 gtcgtggtca gacaccatag catgggcttc acctgaggcc ttgtgaacag ctcagcccct
      961 cccccaccta ctaatccgca tttttaaaaa gataccccag gttgacttgg gggggggggc
     1021 actgcctatg gagatcagga aacaacacct ggatctcttt ccaccatgtg ggccccacga
     1081 ttaaattcag gtcaccagta aaactcagcc tagaggatag aaaactagag agcaacctgt
     1141 aggcagagcc ttctttgaaa gagagagaca ggcatagaga gggagagata tcacacgaag
     1201 gtgtatatta ctatgaaaag ataccttgtg ttagtgctaa gtggccatgc caacaactga
     1261 aagagatggg tactgtgagt ggggataact gggaaatcat ttttcttaaa aaggaaagtg
     1321 gaaatgcact tgatgtatta gtggtgaggc aatgtgatat actcactagc tcacaatttc
     1381 agttagaaat catcagaaac aactggcaac accttttaca tcaaggcaaa acatatcaag
     1441 gcaaaacagg tagtggttta agcctccaga gaacaaaagg ccagggtccc agggaacaac
     1501 aatcctgaat ctaagtggga ggagagaaag ggggaaaggg agaagggggt ggaaatggct
     1561 gggtgtgttt aagtcactgg caaagctttg ctcctccccc acaggagaag gaatacactt
     1621 tctagaactg taaccagcta gccagagagg acaggcaagc ttcaatgttt gccccaagct
     1681 acactcttcc cattctacag atgagaaagc aggctcagag gcagtaagct ctgagacaca
     1741 ggcacttgga gtaaagaggc ccgagccaac ttccagccct tctgttctct gcactacacc
     1801 cttttgtgat tttcacaagc cctaggttgc acaggaaggt tggaggctgc agaagaatga
     1861 gaacggcccg taattaggaa aagatgccgg aagtagatac tgcctagttc tcttattcca
     1921 gcttcaaatc cctaccaatc tccgtagacc caccccactc caaacatgct ggtcctctct
     1981 accagccagc cctctgttta actcttcatg ggcctaaatg acctgaccca gaaaagcaca
     2041 cctagtattt acaatcttct agtctttaaa ctacttagaa caaacactgt cttcctcacc
     2101 agtgcaggta ctcaacaact tttttttcca agatggagtt actgagtgaa acagagtaga
     2161 cagggactgg agagatggct cggtgattaa gagcactgac tgctcttcta gaggtcctca
     2221 gttcaaatcc cagcaaccac atggtgactc acaaccatct gtaatgagat ctgatgccgt
     2281 cttctggtgt gtctgaagac agttacagtg tactcatata taataaatat atctttacca
     2341 aaaaaaagaa aaataggcag atggtgaacc ctgacagtgc tctaattcct tacaagtcag
     2401 gggctggaga ggtagctctg tagttaagag cactggttgc tcttccagag ttcaatttcc
     2461 agcaaccaca tgttggctta caaccatcta tagtgggatc taatattctc ttctgtcatg
     2521 caggcataaa tgcaaattaa gcactcatac gtaaataaat tttaaaaaag aaaaggaaac
     2581 aggttatagg acacatgagg tatgtgcttc tcaaataggt tgaggcctca gcagttctca
     2641 acctgtgggt ttggtgcatg tacagggata gcatatcaga tatcctgcat ataagaaaca
     2701 gcagccagaa aataatttta tgactgggga tcatcacaaa atgaggaact gtaccaaagg
     2761 gtcccagcat tagaaggtgg agaattattg ggctgaagga tcagaagtta gaaggcagcc
     2821 ttagcaggca agaggcctgg gattcaaccc tcatggcaga aacaagaaaa ccaaatgaag
     2881 atgttcatat ttgattttat attttcatca tatacttaaa agttgacctt taaaaacact
     2941 tttttggggg ttggggattt aactcagtgg ta
//
