LOCUS       XM_039108951            1483 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus high mobility group protein B1-like
            (LOC120102455), mRNA.
ACCESSION   XM_039108951
VERSION     XM_039108951.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 5% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1483
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1483
                     /gene="LOC120102455"
                     /note="high mobility group protein B1-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 Proteins, and 93% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:120102455"
                     /db_xref="RGD:41275327"
     CDS             1..612
                     /gene="LOC120102455"
                     /codon_start=1
                     /product="high mobility group protein B1-like"
                     /protein_id="XP_038964879.1"
                     /db_xref="GeneID:120102455"
                     /db_xref="RGD:41275327"
                     /translation="MDGVAAWIYTSHDPQNPKGKVSSYTFFVQTWEEHKKQHPDASVN
                     FSEFSKKCSERWKTMCAKENGKYEDMAKADKAHHEREMKTYILPKGETKKRFKDPNAL
                     KRPPSAFLFCSDHRPKIKGKHPGLSIGDVAKNLGEMWNSTVMDDKQPSEKKATKLKET
                     YEKDIAAYRAKGKPDAVKKGVVKAEKSEKKKEEKDEEEEEEDD"
ORIGIN      
        1 atggacggag ttgcagcctg gatatacacc tctcatgatc ctcagaaccc aaaaggcaaa
       61 gtgtcctcat atacattctt tgtgcaaacc tgggaggagc acaagaaaca gcatccggat
      121 gcttctgtca acttctcaga gttctccaag aagtgctcag agaggtggaa gaccatgtgt
      181 gctaaagaaa atggaaaata tgaagacatg gcaaaggctg acaaggctca tcatgaaaga
      241 gaaatgaaaa cctacatcct ccccaaaggg gagaccaaaa agaggttcaa ggaccccaat
      301 gcactcaaga ggcctccttc ggccttcttg ttctgttctg accaccgccc aaaaatcaaa
      361 ggtaagcatc ctggcttatc cattggtgat gttgcaaaga atctaggaga gatgtggaac
      421 agcactgtca tggatgacaa acagccctct gagaagaagg cgaccaagct gaaggagacg
      481 tatgagaagg atattgctgc ctacagagct aaaggaaaac ctgatgcagt gaaaaagggg
      541 gtggtcaagg ctgaaaaaag tgagaaaaag aaggaagaga aagatgagga ggaggaagag
      601 gaagatgatt gatgataagt gcagtttttt tcttatttat aaagcattta acgcccctgt
      661 acacaactca ctcctttcaa agaaaaaaaa tgaaatgtaa aaaaaattta aaaaaagttt
      721 atagtcctat ttcccttcct ctttactctc tctgctttgg cttgtgctta gagatgtgag
      781 caaggctgtg cctccccgcc attttggatt ctctctaaaa ccataagccc aaagagattc
      841 tccctcctat agattctttt cggttatggc attttatcac agcaaaagaa agggacccca
      901 atccctcaca cagcaaacat gcacgtacac tttataaata aataaaatta aaatttaaaa
      961 aggaaacctc acaaagatta ggagtccctg tcccaacttg tcccccaaca ctgagcatct
     1021 tcctcacaat ttacatccca gacccccata acaagagggg cttagggagt catccctact
     1081 ctcttgaata ccatcaataa agttcaggtc agaaaaaaag acgtcaggag tggtgggggc
     1141 ctggaggggt ggctcaatac tttgcatagc ttgctgctct tgcagacgac ctcagtatgg
     1201 tttctagcac ctacatatat accacttata actccaccag attttatata tttataaaat
     1261 tacacacaca cacacacaca cacacacaca cacacacact tgtgtgtgtg tatgtatata
     1321 tatatatttt ttttttggtt cttttttttt ttcggagctg gggaccgaac ccagggcctt
     1381 gcgcttccta ggcaagcact ctaccactga gctaaatccc taacccccat atttttcttt
     1441 ttttttttaa gctgacagta ggcaacatga cacagctcag ggc
//
