LOCUS       XM_039108780            3760 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus endogenous retrovirus group K member
            21 Env polyprotein-like (LOC120102367), mRNA.
ACCESSION   XM_039108780
VERSION     XM_039108780.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108780.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 2 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3760
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3760
                     /gene="LOC120102367"
                     /note="endogenous retrovirus group K member 21 Env
                     polyprotein-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 ESTs, 2 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 79 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:120102367"
                     /db_xref="RGD:40972096"
     CDS             618..2687
                     /gene="LOC120102367"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 2 bases at 2
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:966..968,aa:OTHER)
                     /transl_except=(pos:969..971,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: endogenous retrovirus group
                     K member 21 Env polyprotein-like"
                     /protein_id="XP_038964708.1"
                     /db_xref="GeneID:120102367"
                     /db_xref="RGD:40972096"
                     /translation="MPNHQFESQTDSSGQPKETDIRPPPRKRPNRRIMWNLAKKIKAT
                     RLEPKMKPRQTPTWTQLKTLTAQAKEVLKAAHAPETATLLFVAMLAVMSAPTALGESY
                     WAYLPKPPILHPVRXXVSDHIKVLTNQTLVIGGSPDFHLLKNSSGYVDFEGKSDSLPI
                     CFSFSPSVPVGCFQVGKGVFNTDTPTLDNTKPDGKGNGRRMWELWMTTVGDKEEKRQH
                     YTTAKNLPPRYPHCRAAFKKNALWEGDENAFPRWLPCAFPDNGVRFSPLGAAGLLWDF
                     SMSSPDKDQSNYLSTNSKLYGNYVPPVGKPIKRWYDAGWVEPTWFWEPLHTDLPDRQN
                     KPLIEHPELFRLVASSEKLLLKKPGAADYDAVSVSACVTYPYAILVGLPQLISIDKVE
                     SIFSIKCTSCKLTNYIDSTVSGSVILIVRRPPYVLLPVDLGDEPWFDDSAIQTIRYAT
                     GLIRTKRFVAALILGITALIAIVTSFAVSTTALVKEMQTATFVNDLHKNVTLALSEQK
                     IIDLKLETRLNALEEVVLELGRDVTNIKTRMATRCHANYDFICVTPLPYNATEKWERT
                     KAHLLGIWDDDNISYNIQELTSLITEMSKQHVDTVDLSGLARSFADRVKSLNPIDWTQ
                     YFIFIGVGILLLVVVLMIFPIVFRCFADSIAQVQADLNLVLLKNKKGGAAAPAAEIIE
                     LRGRHDD"
ORIGIN      
        1 atacttttag acagggatca gacatgcaat attattgccc caagccttag atgtgcatct
       61 acaggactag cgaagatggg atcaaagggt taactagagt gatagaacta ggtgcacaga
      121 gctgatggcg taagatatgg tagacttgcg gtcccctgaa acttcctcct tggcgtgaca
      181 aacggaaaac tagactaggc tggctgactg cggctcgtct gtaaaaaata acaagctgta
      241 cctttttaca gaaaaaccaa atgttcttgg ccatggtcca agattgttat acaatgaaaa
      301 tagtgtataa atgtctgatg ctctctcagt aaagttgcaa cagctgaaga cactctctct
      361 gtgtctgtgt ctgtgtttga catcccgtct ccgctccacg cgtgtcctca acaggggtcc
      421 ctccgcggat ccttggaacc tccaagattg ccgaccgcgg aagctggcgc ccgaacaggg
      481 acccccgaca cgtgcatgct gttgtattct tgtgcttttc ctgtttgtct tatatcctct
      541 tgctttagat ctgcaatcac tacaggagcg gaacggattc accgaaggga actgcagtcc
      601 cgcctacgga gaagaggatg ccgaatcacc aatttgagtc ccagacagac tcatcaggcc
      661 agccaaagga aacggacatc cgtcccccac cccgaaagag gccgaaccgc cggataatgt
      721 ggaacctggc caaaaagatc aaggcgactc gcctggagcc gaaaatgaaa ccacgccaga
      781 cgccgacgtg gacacagctt aaaaccctga cagctcaggc aaaggaagta ttgaaggctg
      841 cacatgcccc ggaaacggca accttgctgt ttgtggctat gcttgcagtc atgagtgcgc
      901 ccaccgcttt aggggaaagt tattgggctt acttaccaaa gccacccata ttacatcctg
      961 taaggtgata ggtgtcggat cacatcaagg ttttaaccaa tcaaacatta gtgatagggg
     1021 gatcgcctga ctttcacctt ctaaagaaca gctcgggtta tgtagatttt gagggaaagt
     1081 ccgattctct gcccatttgc ttctctttct ccccttcggt gccagtgggc tgttttcaag
     1141 tgggaaaagg ggtgtttaac acagataccc ccaccttgga caataccaaa ccagatggaa
     1201 agggcaatgg gcggcgtatg tgggaattgt ggatgaccac cgtgggcgat aaagaagaaa
     1261 aaagacaaca ttataccaca gcaaagaatc ttccgccgcg ctacccccat tgcagagcag
     1321 catttaaaaa gaacgccctt tgggagggag atgagaatgc tttcccgcgc tggcttccat
     1381 gtgccttccc tgacaatggg gtaagattct ctcccttagg cgctgctgga cttctctggg
     1441 acttctccat gtcctcacct gataaagatc agagcaatta tctctccacc aactcaaaac
     1501 tttatgggaa ctacgtgcct ccagttggaa aaccgatcaa aagatggtat gatgcggggt
     1561 gggtagaacc gacatggttc tgggagccac tccacacgga cctccctgat agacagaaca
     1621 aaccactgat agaacatcca gaactgttcc gactggttgc ttctagtgag aaacttttgc
     1681 tgaagaaacc aggagctgct gattatgatg ctgtttcagt ttctgcttgt gttacctatc
     1741 cctatgcaat attagtagga ttgccacaat tgattagcat agataaggtt gaatctattt
     1801 ttagtattaa gtgtacatca tgcaagctga ctaattacat tgattccact gtatcgggat
     1861 ctgttatatt gattgtcagg agacctcctt atgttttgtt accggtagac ttgggagatg
     1921 agccatggtt tgatgattct gccatccaga ctattaggta tgctacgggt ttgattagga
     1981 caaaaagatt tgtagcagcc ttaattctag gtataaccgc tttgatagct attgttactt
     2041 cttttgctgt ttctactact gctttggtta aggaaatgca gactgccact tttgttaatg
     2101 atctccataa gaatgttacc cttgcattat cagaacagaa gattatagat ttgaaattag
     2161 aaactagatt aaatgcccta gaagaggtag tattagaatt aggacgagat gttacaaaca
     2221 ttaagactag gatggccaca cgctgtcacg ctaattatga ttttatttgt gtgactcctt
     2281 taccttataa tgctacagaa aaatgggaaa ggaccaaagc acatttgcta ggcatatggg
     2341 atgatgataa catttcttat aatattcagg aattgacatc cttaatcaca gaaatgagta
     2401 agcaacatgt agatacagtg gacctctctg gattggcaag atcctttgcg gatagagtta
     2461 aatcattaaa tccaatcgat tggacacaat attttatttt tattggagtt gggattttac
     2521 tacttgttgt tgtactaatg atcttcccaa ttgtattccg atgctttgca gattccattg
     2581 cccaggttca agcagatctc aatttagtgc ttttaaaaaa taaaaaagga ggagctgccg
     2641 cgcctgcagc agagataatc gagctccggg gcagacatga tgactgagtg ggagccggtt
     2701 cgagggttcg caccacacgt ggttaagccc cctgctttcg tgcggcagac tccaagaaga
     2761 tgtgcacctg gacttgcccc ctgctgcaaa cttggctctg ggctgatggg catctgggtc
     2821 atgggaaaga tcgtagtcgg cacctatttc tttactcttt ctttgtttga ttctgagtat
     2881 gatcttggca agacagagac ttcctttaat aataggagag aaggtcctga tctatttttg
     2941 attactaata ccacaagctt tcctgcttcc tctttacagc agacagagcc tctgatgaca
     3001 gggactccaa ggttgcagat tatgtcttct cttatagata aggaaatcaa agatttagca
     3061 aagaattata cttataagga tagtgatact tcttctatta gggtgttggt agaactgttg
     3121 agaaatgatt ccttgagctt tgggtcggct atgaatattt tacagagtat agaaacaggt
     3181 ggtggcaacc aggtacttac aggggaccat atgtgtatcg accaatggat gctccattac
     3241 catatactgg agaatatgat ttgaatttta ataggtgggt tactaaggat ggatataggg
     3301 tcaggtattt gtcactgcct tggtcagaaa gattggcaag agcccgtcct ccttggtgtg
     3361 tgctctcaga agaagagaaa tgggaggaaa ggtcacagat catcagatac tttagacagg
     3421 gatcagacat gcaatattat tgccccaagc cttagatgtg catctacagg actagcgaag
     3481 atgggatcaa agggttaact agagcgatag aactaggtgc acagagctga tggcgtaaga
     3541 tatggtagac ttgcggtccc ctgaaacttc ctccttggcg tgacaaacgg aaaactagac
     3601 taggctggct gactgcggct cgtctgaaaa aaataacaag ctgtaacttt ttacagaaaa
     3661 accaaatgtt cttggccatg gtccaagatt gttatacaat gaaaattgtg tataaatgtc
     3721 taatgctctc tcagtaaagt tgcaacagct gaagacactc
//
