LOCUS       XM_039108584            5444 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sterile alpha motif domain-containing
            protein 9-like (LOC120102230), mRNA.
ACCESSION   XM_039108584
VERSION     XM_039108584.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108584.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 4 indels
            internal stop codons :: corrected 2 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-140               JACYVU010000141.1  20953554-20953693   c
            141-3903            JACYVU010000141.1  20941805-20945567   c
            3904-4314           JACYVU010000141.1  20941392-20941802   c
            4315-4524           JACYVU010000141.1  20941181-20941390   c
            4525-4525           "N"                1-1
            4526-4671           JACYVU010000141.1  20941035-20941180   c
            4672-5444           JACYVU010000141.1  20940261-20941033   c
FEATURES             Location/Qualifiers
     source          1..5444
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5444
                     /gene="LOC120102230"
                     /note="sterile alpha motif domain-containing protein
                     9-like; The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 4 bases in 3 codons; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 2 Proteins, and 97% coverage of the annotated
                     genomic feature by RNAseq alignments, including 115
                     samples with support for all annotated introns"
                     /db_xref="GeneID:120102230"
                     /db_xref="RGD:41041657"
     CDS             163..4851
                     /gene="LOC120102230"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 4 bases in 3 codons; substituted 2 bases at 2
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:4399..4401,aa:OTHER)
                     /transl_except=(pos:4678..4680,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: sterile alpha motif
                     domain-containing protein 9-like"
                     /protein_id="XP_038964512.1"
                     /db_xref="GeneID:120102230"
                     /db_xref="RGD:41041657"
                     /translation="MDRHVTQPKLIKDWTKEHVRKWITEDLKIDEKYAQIVFDEEVTG
                     MVLQELTEKDLREMGLPRGPALLIKHMYNKLISSPEGHNQDSRQLNNKTLSINEQPKK
                     SNSEEENSISSNSDLGLRETGQNEERGTSLLKENTLGDVETKDMKGNKPKSEQMSCMP
                     HPFNFAHDANRYIEHSILRVAETGPLNLIDPVHEFKAFTNTETAQEQMKMKFSNETFR
                     FAAACMNTRTNGTIHFGVKDKPHGEIVGVQVTSKDIFINHFNVMITKYFEDSDIHEAR
                     ACIREPRFVEVLLLNNTQSNRFVIEVDVIPKHSICQEKYFYVMLQTCTGTTWKQSKDT
                     SLFVREGASSRDILGNPKQRDREFKKFLENLKMSIASRKAAEECMVVSKKDSEGLKLS
                     KLLTRHQGSLDKSYYDWYILVTNSCVPTQMEHLDFIKEIKLFAVLDFDPYSHIQGVFK
                     AYRESRVANLHLPTHYEETTTIEEKISTLKLYEQPSWIFCNGRVDLSCQPLEPHLWQR
                     DRASGVRKLISFLTGGNIIERGKVLVVFLLLSPVENQKDPLLETFCAFYQVFNGMDNM
                     LCICVNPSIYQQWSDLLQVRLEMKDDLAKHSISTLNIELVNSTILKLKSVIQSSRRFL
                     PSCGSSSVILEKMDEDIMSALEILCENECRDTDIEKDESQFLEFKKLREEHFYRGGRV
                     SWWNFYFSSENYSSAFVKRDNFEELTTLIQQCADSPNPVFAKFINMYHHPGCGGTTLA
                     MHVLWDLKQKFRCAVLKNKATDFIEIGEQVSKLISYKASSHQDYIPVLLLVDDFEEQE
                     DTYILQSAINSFIAHKGVRYEKTLVIILNCMRSQNPDESAKLADSISLKYQLSPKEKR
                     AFDAKLQEIEKEYKDCENFYSFMILKDNFDTTYIKNVVKNTLKDLDAHSRKAQLISYL
                     ALLNTFVIDSTISVSQCEIFLGITYRNKRGKLETVEDNMGTYSTLLIRTEVSDYGKYA
                     GIRITHPLIAIHCLKELEMKYGMDRCHIALNMLEENVFYNSGIGRDKFKHDVQTLLLT
                     RQCKEHGGEIGTLFSPFMEELQDEETEKVLTAGSNRFPQNTFIRRALARHFYLKEKNF
                     STALVWANQAKRKAPMNLYISDKLGRVYKRDIRCWLGKNNTYRSLSVDDLTRFLDVGE
                     KASKAFKESQEQTDSKDYQTEFWSPQMFRRRTLNTAGFFGEIEVGLDTIQLRQLTPPF
                     HKENEMSKESMAQFSSGKGTIPPEPKVLSNFITFLQSLKRHFDFFLDYMGLLKPRNTP
                     KELTELSLSKKVSRCFKKYAERFCQELQGKEDLLLQEENCRKRIKAWRADTFSGLLEY
                     LNPNHKEANNMENIVEHYTFLLQRTLNKQLSKALIKDTQNFILANIIISCLKPSSKHI
                     LPFSTLKKKLREVLQIVGLTHSYPDPYFLACLLFXPENKEVDQDSSLIEKYVSSLNRS
                     FRRQYKHMCRSRQPSTLFXLGQKKGLNSLVHKAEIERYFSEVQDSNSFWQNGVVWEKG
                     EVKFLLCLLDGXAEDKQISLEYGTEAKIKIPVTSVYSGPLRSGRNIERASFYLGFFIE
                     GPLAYGIKVI"
ORIGIN      
        1 gaagaccagc tctgtcctgc atgtgtatct gctttctggt gacttacaga acatgacttt
       61 gccacatttc caaatgaaat agctccaaga acacacagct caaatttctt ttataaaaag
      121 aagtctccag gaaagacttg ggaacaacct tgaagcttgg acatggatag gcacgtaact
      181 caacctaaat tgatcaaaga ctggaccaaa gaacacgtaa gaaaatggat aactgaagac
      241 cttaaaattg atgagaaata tgcccaaatc gtgtttgatg aagaggtaac agggatggtc
      301 ctgcaggaac taactgaaaa ggatcttaga gaaatgggct tgccacgggg tccagcactt
      361 ctgataaaac atatgtataa caaactaatt agttcccctg aaggtcacaa tcaagattcc
      421 agacaattaa ataataaaac actctctata aatgaacaac caaaaaagag taacagtgag
      481 gaagaaaact caatttcatc gaacagtgac cttggtctta gagagacagg gcagaatgaa
      541 gaacgaggaa caagtctctt gaaagaaaac acattaggtg atgtagagac taaagacatg
      601 aaaggtaata agcccaaatc agaacagatg tcttgcatgc cacacccttt taattttgcc
      661 catgatgcca accgatacat agaacattct attttacgag tggctgagac agggccacta
      721 aatctcattg acccagtaca tgaattcaaa gccttcacaa acacagagac agcacaagag
      781 caaatgaaga tgaaattcag caacgagaca ttccgatttg cagcagcttg catgaataca
      841 cgtaccaatg gtactatcca ttttggagta aaggacaaac cacatgggga aattgttggt
      901 gtgcaagtca ccagtaaaga catctttatt aaccacttca atgtgatgat caccaagtat
      961 tttgaagaca gtgatatcca tgaagccagg gcgtgtatcc gggaaccaag gtttgtggaa
     1021 gtccttctgc tgaacaatac acaatctaat agatttgtca tcgaggtgga tgttattccc
     1081 aaacattcta tatgtcaaga aaagtatttc tacgttatgt tgcaaacttg cacaggtaca
     1141 acatggaaac aaagcaaaga tacttcattg tttgtgagag aaggagctag ctctcgggat
     1201 atcctgggca accccaaaca acgggataga gagttcaaaa aatttcttga gaatttaaag
     1261 atgtcgatag catctagaaa agcagcggaa gaatgtatgg tggtatctaa gaaagacagt
     1321 gaaggactaa aactgtctaa acttttgacc agacaccaag gctcacttga taaatcttac
     1381 tatgattggt acattcttgt aacaaattcc tgtgtaccaa cgcaaatgga gcacttagat
     1441 tttataaagg aaattaaact gtttgctgtg ctagattttg atccttactc tcacatccag
     1501 ggagtgttca aagcttacag agaaagcagg gtagcaaacc ttcacctacc cactcattat
     1561 gaggaaacaa ctaccataga agagaaaatt tctactctga aactttatga gcaacccagt
     1621 tggatcttct gcaatggcag agtagacttg tcatgtcaac ctctagagcc acatttatgg
     1681 cagagagata gagcttctgg cgttagaaag cttatttcat tcctcacagg tggaaatata
     1741 atagaaaggg ggaaggtttt ggtggtgttt ctcttacttt ctccagtaga aaatcaaaag
     1801 gatccactcc ttgagacttt ctgtgctttc tatcaagttt ttaatggaat ggataatatg
     1861 ttatgcatct gtgtaaaccc aagtatctac caacaatgga gtgatctcct acaagtaaga
     1921 ctggaaatga aagatgattt agcaaaacat agcatttcca ctttaaacat agaactggtc
     1981 aacagcacca tcctcaaact gaaatcagtg attcagtctt caaggagatt tttgccctcc
     2041 tgtggttcct cctcagttat tctggagaaa atggatgaag acatcatgag tgcattggaa
     2101 atcctctgtg aaaatgagtg tagagacaca gacatagaga aagatgaatc tcaattccta
     2161 gaatttaaga aattgagaga agaacacttt tatcgaggag gcagagtatc ctggtggaac
     2221 ttttattttt cttctgaaaa ctattcttca gcttttgtaa aaagagataa ttttgaagag
     2281 ctgacaactt taatacaaca gtgtgcggac tctcctaacc cagtatttgc caaattcatc
     2341 aacatgtacc atcacccagg ctgtggaggt acaacgttgg ctatgcatgt tctctgggac
     2401 ttaaagcaga agttccggtg tgctgtcttg aaaaacaaag caaccgattt tatagagatt
     2461 ggagagcaag tgagcaagct tatcagctac aaggcttcca gccaccagga ttatattccc
     2521 gttctgctcc ttgtggatga tttcgaagaa caagaggaca cttatattct gcagagtgcc
     2581 atcaattcct ttatagcaca caagggtgtg agatatgaaa aaactttagt aatcatccta
     2641 aactgtatga gatctcagaa tccagatgaa agtgcaaaat tagctgatag catttcacta
     2701 aaataccaac tctctccaaa agaaaaaaga gcctttgacg ccaaactgca ggaaatagaa
     2761 aaggagtaca aggactgtga aaacttttat tccttcatga tcttgaagga caattttgat
     2821 acaacttata taaagaatgt agtgaagaat acactgaagg acctggatgc tcacagcaga
     2881 aaagcccagc tcatttctta tctggcatta ctgaacactt tcgttataga ctctaccatt
     2941 tcagtatcac agtgtgaaat atttttggga atcacttaca gaaataaacg tgggaaactc
     3001 gaaactgtag aagacaacat gggaacctat tctacacttc taataaggac tgaagtttca
     3061 gattatggga agtatgctgg tatacgtatc actcaccctc taattgccat ccactgttta
     3121 aaagaactgg aaatgaagta cggaatggat aggtgtcaca ttgcactgaa tatgctagaa
     3181 gagaacgtat tctataattc tggaatagga agagacaaat ttaagcacga tgtgcaaact
     3241 ctcttgctta cgagacaatg caaggagcat ggaggtgaaa taggcacact gttttcccca
     3301 ttcatggaag aattgcagga tgaggaaact gaaaaggtct tgactgcagg aagtaaccga
     3361 ttcccacaaa atacattcat tcgtcgagct ttagcaagac acttctatct taaagagaag
     3421 aactttagca ctgctctggt ctgggcaaat caggccaaaa ggaaagcacc tatgaatttg
     3481 tatatttcag acaaacttgg tcgagtttac aaaagagaca tcagatgctg gttaggtaaa
     3541 aataacactt atagaagtct tagtgtggat gatctaacac gcttcctaga tgttggtgag
     3601 aaggcttcga aagccttcaa agagtctcag gaacaaactg acagtaaaga ctatcaaact
     3661 gagttctggt caccacagat gttccgaaga agaacattaa atacagctgg cttcttcggg
     3721 gaaatagaag tgggtcttga cactatccag cttcgtcagc tcacacctcc tttccataaa
     3781 gaaaatgaaa tgtcaaaaga atctatggca cagttttcat ctggaaaggg gaccatccct
     3841 ccagaaccca aagttctcag caactttata accttcctac agagtttgaa aagacacttt
     3901 gatttttttt tggattatat gggtcttctg aaaccaagga acaccccaaa agaattgaca
     3961 gaactctcac taagtaagaa agtcagccgc tgtttcaaga aatatgcaga acgtttctgc
     4021 caggagttac agggcaaaga agatctgtta ctgcaagagg agaactgtag gaagcgcata
     4081 aaagcttggc gagcagatac attttcagga ctccttgaat atcttaatcc aaaccacaaa
     4141 gaagcaaaca acatggaaaa tatagtggaa cactatacct tcctattaca gcgtacctta
     4201 aacaagcaat tgtcaaaggc actgataaag gacacacaaa atttcatttt ggccaacatt
     4261 attatcagtt gtctaaagcc cagttccaag cacatcctgc catttagcac actgaaaaaa
     4321 aagctcagag aggtcctgca gattgtggga ctaactcatt cgtatcctga cccttatttc
     4381 ctggcctgtc tcctattctg accagaaaac aaagaggtag atcaagattc ctcactgata
     4441 gaaaagtatg tctcatcctt gaatcgatct ttcaggagac agtacaagca catgtgcagg
     4501 tcaaggcagc caagcacact cttcnacttg gggcagaaga agggtcttaa cagtcttgtt
     4561 cacaaggctg aaatcgagcg ctacttcagt gaagtacaag attcaaattc tttctggcag
     4621 aatggagtag tgtgggaaaa aggagaggtc aaattcctcc tatgcctgct ggatggctag
     4681 gctgaagaca aacaaatctc actagaatat ggaacagagg caaaaataaa aatacccgtg
     4741 acttctgtgt attctggtcc actcagaagt ggaaggaaca tagagagagc gtccttctac
     4801 cttggatttt tcattgaggg ccctctggca tatggcataa aagtaatatg aggaggtata
     4861 ttagttcaac aatgttattt tgcatctctc attgtactta ctcttcctag cccataaaat
     4921 ttgcatggca ttattggctt aattataatc acacagtttg cttctttttc tctgaatcag
     4981 ttctgagaaa ctttgtaaga caggaaatat accacagagc ttggctacag tagcaacagt
     5041 cattcccata tcctcagtat gcactcccaa gtagatatat ttggttaaga catttcagtt
     5101 ggtctctggg tcacactcta actggtcaat aaaaatctgt tgtacattaa ctgatttttc
     5161 tgaattattt cttcattatc acaccaggga tttaactaag aataggataa aagtaaggct
     5221 agagatacag cccagcagtt aaatgcactt gctactgtca cagaagacct gagttcagtt
     5281 cccaacacca gatcagtggc tcacaacctc ttaagtttgg cacaagggta tgtaatgtcc
     5341 atctgcacca ccacagtggc aatatacatg tgctcatgtg tgcacacaca cacacacaca
     5401 cagagagaga gagagagaga gagagagaga gagagagaga gaga
//
