LOCUS       XM_039108559            3375 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protein SCAF11-like (LOC120102216),
            mRNA.
ACCESSION   XM_039108559
VERSION     XM_039108559.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108559.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 2 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2219              JACYVU010000141.1  10644176-10646394
            2220-2221           "NN"               1-2
            2222-3375           JACYVU010000141.1  10646395-10647548
FEATURES             Location/Qualifiers
     source          1..3375
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3375
                     /gene="LOC120102216"
                     /note="protein SCAF11-like; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: inserted 2
                     bases in 1 codon; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 ESTs, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:120102216"
                     /db_xref="RGD:41199734"
     CDS             132..3338
                     /gene="LOC120102216"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon;
                     substituted 2 bases at 2 genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:1104..1106,aa:OTHER)
                     /transl_except=(pos:1452..1454,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: protein SCAF11-like"
                     /protein_id="XP_038964487.1"
                     /db_xref="GeneID:120102216"
                     /db_xref="RGD:41199734"
                     /translation="MPGPRPEETPSRGEMKKKPVYNQSVGDQESEDAEGEENRNNADT
                     SGLLYSEVDRCPICLSCLLGKEVGFPESCNHVFCMACILKWAEILASCPIDRKPFQAV
                     FELRAFEGCAKIQVKRRSRELDDKENEESFKKQLVYHESSKSDRRKGNTVREDLLCER
                     SDDLKVLYRNFSNNKMGGKKNATVKTNKVQRLNQCTDSCVRSDMPSVSSCDGHSWGPR
                     TYRVSCTESIEVNEINALIRQKRQELELSWFPNTLPGNGRVGSVPWSVETAVLPLVSS
                     VLPRTIFPASTMSLENFGTSHKGYALAHTQGGGEKKQTSGTSNTRGSRXKPATTAPTR
                     RSTGNSRVETVSPSQKSPVPNYSECDAPGNSNSSVSISPPAESEKQTRQAPKRKSVRR
                     GRKPPSLKKKPLKSVPPAEKTTSSDSVEEDTVDSDTPPVLEKEQQSCVXSSSICSIQT
                     DEENHLAKCLESCDEQTEENEQTKNHEIEEQTEILNSESCTQYPPVLVGEDSGIETKE
                     LCVDNDVSTDYSLKGSDPLENQEQDSGSSGSEVQASVCTESLPEDFLTCPPSDIEGHQ
                     PVSGPLGEVSENATPVLSDERAEDSLMVGNADLNDSVENTEAFVMSPKVESSEGEITH
                     GLNRHCIPSSDTELPELIQTENTEIIPTCGTLENESSGAVQGCEDTLLKHNLDNTQLD
                     NSLEEKTDSLVEHPXSMQLPHEEVEQSEKHFSEDNNEIVPMECDSFCSDQNESEVESS
                     ANTDPKQLSENSVTHSSDNKLSSDPVVENVETVAQPAESLVDKAPKPRTRRSRFHSPS
                     TTWSPNKDAAQEKRRAQSPSPKRETAVESKSSQSPSPKRESARGRRKSHSLSPKKDVS
                     RERRQSRSPKRENAREAKRSESGSPRRDTSRENQRSQSRVKDSSSREKSRSRSRERES
                     DRDAQRRDRDRERRARRWSRSRSCSRSPSRSRTKSKSSSFGRNERDTYSPRWREKWTN
                     DGWRCPRGNDRYRRNDSEKQNENTRNEKDDITADNTNDPSSTDKHRDDCPSWVTEKIN
                     SGPDPRTRNPEKLKDSRPALSGKMPERTLLCRQAHCLS"
ORIGIN      
        1 gtgctcccga cccagccggc cgaacctgtg ggcccgcgcg cgcttctgag cgtccgagga
       61 gtccatggtg cagaacttag cggtggactg acggacaccg ggcctcctgc gctggcgcgg
      121 ccgccggagc gatgcctgga cctcggcctg aggaaacgcc ttcacgagga gagatgaaga
      181 agaaacccgt atataatcag agtgtgggtg atcaggagag tgaagatgcg gaaggtgaag
      241 aaaacagaaa taatgctgat acttccggct tactgtacag tgaggtggac agatgtccaa
      301 tctgtcttag ttgcctatta gggaaggaag ttggttttcc agaaagttgt aatcatgtct
      361 tctgtatggc ctgtattctt aaatgggcag agatactggc ttcttgtcca atcgatcgga
      421 aaccctttca ggcagtgttt gaactccgtg catttgaagg ttgtgctaag attcaggtaa
      481 aaagacggtc gagagaatta gacgacaagg aaaatgagga gtcttttaag aaacagctcg
      541 tttatcatga aagttccaaa agcgacagga gaaaaggaaa cactgtaaga gaagatctgt
      601 tatgtgagag atctgatgac ttgaaggtgt tgtatagaaa cttttcaaac aataaaatgg
      661 gtggaaagaa aaatgctaca gtaaagacaa acaaggttca aagattgaat cagtgtacag
      721 attcttgtgt gagaagtgac atgcccagtg tatcttcatg tgacggccac agttggggac
      781 ctcgcaccta cagagtttcc tgtacagaat ctatagaagt caatgaaatc aatgcattga
      841 ttaggcagaa acgacaggaa ctggagttgt catggtttcc taatacatta cctgggaatg
      901 gaagagttgg ctctgtaccc tggagtgtgg agacagcagt tcttcctctg gtttcctcag
      961 tgctgccaag gacgattttt ccagcaagta ccatgtcact agaaaatttt ggtacttctc
     1021 ataaggggta tgcactagca catacccaag gaggaggaga aaaaaagcaa acttcaggta
     1081 catcaaacac cagaggatca agatgaaaac ctgcaacaac tgctcctaca aggaggtcca
     1141 caggaaactc acgtgttgag acagtcagtc catcccagaa gtccccagtg ccaaactact
     1201 ctgagtgtga tgccccaggg aatagtaatt cctctgtcag tatttcccct ccagctgaat
     1261 cagaaaagca aacaagacag gctccaaaac ggaagtcagt aaggagagga agaaaaccac
     1321 cttctttgaa aaagaaacct ctgaaatctg tacctcctgc tgaaaaaacc acatctagcg
     1381 attcagtaga ggaagacact gtggattctg acactccacc cgtgttggaa aaggagcagc
     1441 aatcatgtgt atagagtagt agcatttgct ctattcagac agatgaagag aatcatttgg
     1501 ctaagtgctt ggaaagttgc gatgaacaaa cagaagaaaa tgaacaaacc aagaatcatg
     1561 agatcgagga acaaacagaa attttaaatt ctgaatcttg cactcagtat cctcctgtgc
     1621 ttgttggaga ggattcaggg atagagacta aggagttatg tgtagacaat gatgtttcta
     1681 cagattattc tctaaaagga agtgatccat tggaaaatca agaacaggac tctggaagct
     1741 cagggtcaga ggtgcaggca tccgtgtgta cggagagtct gcctgaggat ttccttacgt
     1801 gtccaccgtc tgacattgaa ggacaccagc cagtgtccgg tcccctgggt gaagtatctg
     1861 aaaacgccac cccagtgctt agtgatgaaa gagcagagga cagtctcatg gtaggaaatg
     1921 ctgatttgaa tgattctgta gagaacacag aagcatttgt aatgagcccc aaagtggagt
     1981 cttctgaggg tgaaattaca catggactga acagacattg tattcccagc tcagacacgg
     2041 agttgcctga gcttattcaa acagaaaata cagaaataat tccaacatgt ggcactttag
     2101 aaaatgaaag ttctggtgct gttcaaggtt gtgaagatac cttactaaaa cataatcttg
     2161 acaacaccca attggataac tccttagaag aaaagacaga ctctctggtt gagcatcccn
     2221 natccatgca gttacctcac gaagaagttg aacagagtga gaaacatttc agtgaagata
     2281 ataatgaaat agtacctatg gagtgcgatt ctttctgtag tgaccagaat gagtctgaag
     2341 tagagtcatc agcaaatact gaccccaaac agttgagtga aaattctgtg acacacagtt
     2401 ctgacaacaa gctgtcttct gatcctgtag ttgagaatgt tgaaactgta gctcaaccag
     2461 ctgaaagcct agtggataaa gccccaaagc ctcgaactcg gagatctaga ttccattctc
     2521 cgtctacaac ttggtctccc aacaaagatg ctgcacaaga aaagaggcgc gctcagtctc
     2581 catctccgaa aagagagact gcagtagaaa gtaagagttc tcagtcacca tcccccaaga
     2641 gagagtctgc cagaggacga agaaaatccc attctctctc accaaaaaaa gatgtatcaa
     2701 gagaaaggag gcagtctcgg tctccaaaga gagagaatgc tagggaagct aaaaggtctg
     2761 agtcaggctc cccaagaaga gacacttcta gagagaacca gaggtctcag tccagggtga
     2821 aagattcttc ctccagagaa aaatctaggt cccggagcag agaaagagag agtgacagag
     2881 atgctcagag gagagatcga gatagagaga ggcgagccag aaggtggtcc cggtctagat
     2941 cttgctctcg atcgccatca agatcaagaa cgaagagtaa gagttcatca tttggtagaa
     3001 acgaaagaga tacttactct ccccggtgga gggaaaaatg gacaaatgat ggttggaggt
     3061 gtcccagagg gaacgaccgg taccggagga atgattcaga gaaacagaat gaaaacacaa
     3121 gaaatgaaaa agatgatatc actgcagata atactaatga tcccagttcc acagataagc
     3181 atagagatga ctgtcccagc tgggtgacag aaaaaataaa ctctgggcca gatccaagga
     3241 ccagaaatcc agaaaagtta aaagattccc gacctgcatt gtctggcaaa atgcctgaaa
     3301 ggactttgct gtgtaggcag gcccattgtc tgtcttgaga ctatcaggct ttcctcaggc
     3361 tgcccatacc tctaa
//
