LOCUS       XM_039106769            5748 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus CD99 antigen-like protein 2
            (LOC120101849), transcript variant X1, mRNA.
ACCESSION   XM_039106769
VERSION     XM_039106769.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5748
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5748
                     /gene="LOC120101849"
                     /note="CD99 antigen-like protein 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:120101849"
                     /db_xref="RGD:41039243"
     CDS             4114..4689
                     /gene="LOC120101849"
                     /codon_start=1
                     /product="CD99 antigen-like protein 2 isoform X1"
                     /protein_id="XP_038962697.1"
                     /db_xref="GeneID:120101849"
                     /db_xref="RGD:41039243"
                     /translation="MVARLTALLLYLVFSLAILVQTESHFSTTTRRTGTTRASSNPAE
                     RGDHITTTTTRRPGTTRAPSNPMELDGFDLEDALDDQNDLDGPKKPSTGEGGGWSDKD
                     LEDILGGGGYKPDKNKGSAECSCSGAQSGSQRLPASPRAEQDAAATTPEVAAIRLGFL
                     LKTGDEADHIHLLPQLWLFLYNQTLPAESEL"
ORIGIN      
        1 agtcagaggg ttatatagag aaggctaggg ggttttggcg tggttacata taattggctc
       61 atttaaacat agcagtgaga acaaagcaga aagagtacgt gttagaagtc aggggcttat
      121 caggggccgg aggacaccta gttgaaatat ggccctgagt gtgctagggg gaggtgtctt
      181 cctgccagat gtcccatgaa tcagtcccat taactcaggc tggttcctgt attccttttt
      241 tttttatctt tatggcctgc tattcctggc agcagggctt agccctgagt ttgtggcttt
      301 tggggctaac tcttttaatt ttatatttct aaacctagaa tttgtataat tttcttttca
      361 gtggatgttg gcaccacgtc tccagagtct gatcacgctt ctcctttgcc acacccagca
      421 cctggtaact ggccatccta ccgggaaaca gaatcggctt ctttggtctg tcaaatcaaa
      481 caggggccac ctgtgggaga ggtagaggtc ctggatttca aggacccagc attgcttttg
      541 gatccaatgg gcaccagaac ctcagctcct ccacaggcag atgcagcttt cctaactcca
      601 ggcaggaaag accttgggat cagaaacacc cagtcctatc cagagtcacg gccagtgctt
      661 tcacagccag atgttcccgt cgctcctttg gaaggagaaa tccttcctaa ttaccccgag
      721 tctggtacat gccacccctg agtggaggga ggtatgtggt aggactggat gaccacgtga
      781 gttctaaagc tcaaggcaag tgcattgaaa aactgggcat ttgaggtttt gtttaaagaa
      841 aatatagcag agttgacaaa ctagacatgg tcattcacct gggcccatcc ctgtaccggg
      901 caggctggga caggctgggg caggctgaga cagaaagatt ttctaggttc aagagtagcc
      961 tgggccatat agagaattgt aggccagcct ggattataca gccagctctc ctcccaagtg
     1021 taatgaaaaa tttcggtttg caagttcaga gaaggtgagc tatgtcgagg cttcataggc
     1081 attgcaggat ggagggtaca gccatttagc tttgactgtg atagttagct gtgcaggctt
     1141 aggcaaacat gctgaagagc cttagggaga gaacatggta tagacacctg tgtctgctat
     1201 taattctggt tcttgtcccc acagctgtgg ccttcccctc ccctgaacca ccttaacctg
     1261 gttctgtgac tcactagcac taaaggtagc aggaagaagg caggggaatg cccagaggga
     1321 acaacctttc atccaccctg atggactggg aaactggtcc tagattcatc ctcccccaca
     1381 cctatctccc gctctccctg ctcaatgatc tctgccagga ggatgtgtca gaggtcatac
     1441 ctctctccac agcatttcaa cttcacagtt tttctgtccg tgtattgaca aaaacattaa
     1501 cctagcagag aggaccttct ggttctgctg ggacattttc tgcaggttca ggggttgttt
     1561 agagaaatag ttcaggaggg aagaaaacac tttgtgttta acagagtata gagtaatagt
     1621 taggggagga ccgttgttgt caagtttgaa tcttggccat gctaaggcaa gttatttcac
     1681 cctcaggtct ctgattttca tttataaacg tattgccagg atttgttgtt agtatgttat
     1741 gttttgagtg cctgcattag tttaagacca tcattactaa tctttagagg atttaaaaca
     1801 tagcaaactg gaggatgggg gtggggagtg aacagctggg ctggaaaaca gagaaactga
     1861 aaacagaaag tctcattaaa aagctttggc ctcctggctc cttttctgct tgatggagtt
     1921 tgatgagcat ttgtttttgt taaagccaaa ggcatggatt tcttttaaaa gttctagaac
     1981 tttcaaattc ttctaacaat ctcctaaaat attcagtgtg agttttttct atctaaagag
     2041 atttaaaggc acgaatcaaa aatttcctca aagggattta gtgttacaga tgggtttttg
     2101 agtggccttt tgttgggggt tgtattttcc tggcccagga agagcacaca gttattggaa
     2161 agtggttgta tgtacagttg tctgaaacct gaggagcggg ctatggccca gcacaaaact
     2221 gtaaactgat gtaaaacctt cagagagttt tcttttgcaa tcggtcatgg ttcttgaagc
     2281 gtgaactttg tagatgataa tgtgtcaggt tgtgcgtggc tgtttaagag ctcagaaagg
     2341 cctgaaatgg aaccagtcac tgggaactga gggtaacagc ataacccagg agggacatga
     2401 tctgtggtat ttaatcagct gccaaatgta gtcaatgctg acatctaaat gctagaatgg
     2461 ttatgaaaaa gactttcagg gggagattgt ccaactggaa gctactaagt cttagaggag
     2521 aaaaatactt ttaaatttta tttaaaaaaa tatttatgtg tgttcatgtg tacaagttca
     2581 tgtgtgggaa agcctagccc ttaagaaaga atgtttggtg agctgtgtga accatagaaa
     2641 catgtaattg ttattattta tgttcagagg aaacactgtt ctcccggagg tttatccagc
     2701 agctgtgggc ttactctggg cagctgttga catggggctg agaccttcta gtaccagctc
     2761 aaggtaggaa attcgaggct tctggtagtg gatggacttg agttaccccg cagctctgtt
     2821 gtgtagtttg aagacagatg ctgtttgaac cttattttct gagtagagag cacccttctc
     2881 aataaatttt aacttcccct ttaagcatat aggatttggt ttgctgagtc agggaattag
     2941 gattttgtta aaggctcaga aaatttctct tctttttagt attgttttca ttagggtgtg
     3001 tgtgtgtgcg tgcgtgtgtg tgtgtgtgtg tgtgtgtgtg tctgtgtgtc tgtgtttgtg
     3061 tgtgtgtctg tgcacgcctg cctgcctgcc tgcctgtgca tatgtatatg tgttgtatag
     3121 gccccatagg cataggaata ggagaggtgc tctgaagtgg ccccagggca gcttatgctg
     3181 catgatggta tagacaggtt ccatgttgcc accctgagca gtgtttctgt gtcctgagag
     3241 cgggctgcag ccctgttcat attgggagct ttcaattcca ggctgcagta ggtttttggt
     3301 tgtcacagca gagagtatct gcattctcac cgccagggag gtggactcca cttgcacaca
     3361 cacacacaga gagagagaga gagagagaga gagagagatt gattcagggg gaaaggctgc
     3421 agcgcatttg ttagtctcag tagactgagc agctgtgaac tttcccttca ctaaggccat
     3481 ccctaactca agcatcagga actgttccct acagctttta ctctggactg agctcaccct
     3541 ccctgttgcc tgccctgatc ctcagcttcc acctggttcc cagcagctac acaaacagac
     3601 cagttctttt agtctgaggc agggattctg ttgcagcttt caacctggag tagcaagcgc
     3661 tgctgaggtg ctggggtcct cgcagctggg agaactgaag tagaggagga aggtgtggcc
     3721 aggtcgaaag ctctgggcca gggtgtggtg gtctcacagg tggccatttc tgagcacagt
     3781 ctccactgct gtttctcacc ccctggcttc tgatactcga aggcctcttc tgacattccc
     3841 attgtgacgc aggaagggga gggttctgtg ggcagcaagt agacacacca cccaatccgg
     3901 atcaggcgac ccaagggtgt ctgttagccc cgcctccgcc cctcccccat gtcccacctc
     3961 cagactgctg ccaagctgct caagtggttc tagctgttgg tggggtcctg cagatgtgat
     4021 aggctcctcc tctccagccc ctcctcccca cccacctctc aggccctcct gggatagctg
     4081 tcctcctctg gggccctgta cttgctccca gccatggtgg ctaggctcac tgctctcctc
     4141 ctttacctcg ttttctcctt ggccatcctg gtccagacag agagccactt tagcaccacg
     4201 actagaagga caggaacaac cagagcctca tcaaatccag cagagagagg ggaccacatc
     4261 accactacta caacgagaag gccaggaaca actagagcac cgtcaaatcc tatggaactt
     4321 gatgggtttg acttggaaga tgccttggat gatcagaacg atctagatgg ccccaaaaag
     4381 ccaagtacag gagaaggagg aggttggtca gacaaggatc tcgaagatat cttgggaggc
     4441 gggggataca aacctgacaa gaataaagga agtgcagagt gcagctgcag tggagcccag
     4501 agtggaagcc agaggcttcc agccagcccc agagcagagc aggatgcagc agccacaact
     4561 ccagaggtag cagcaatcag gcttgggttc ctgcttaaga cgggagatga agctgatcac
     4621 atccaccttc taccacagct atggttgttt ctgtataatc agaccctgcc tgcagaatct
     4681 gagctttgag ctcctgttga tcagaactgg aggagccaga gcctgggcag ttcctggagt
     4741 acatttcccc ttatgagggt tgttatgggg cctctccaca tccacggcta tgtccctcct
     4801 ctgttcgggg gagtctgatg acctgaactt ggctgctgtc ttggagtggc tcctttgggt
     4861 tatcatctgg tcgtgggctg ggtgggctga cagctatttt attaagtcag atatgggtct
     4921 ggcccagaag atgtgcctca taatgggtta tttcaatgtt atgcatccac ttactgcagt
     4981 tcccctcagg aggtccatta caatgatgga gatgtaagtt aataacagtt cctggcacaa
     5041 agtcaatgta tttattagta cagttgtagc agcaactgat cacaaaaaag caggccaaac
     5101 aagatcaagt cttttggata gataggccac tagcctcctc cagggtcaca gtgcctgaga
     5161 catccctcat agccatccca atccacaaaa ctccttctgg gcctgtgtcc accacccaca
     5221 atactactca ggagccccta ctgctaccat caccatagca acagtagcac cgacttgcac
     5281 ccacagttgc tgccagaaga ggggtgcagc atggatgggc cagcatgacc tatgagccta
     5341 tgggaagttg tgtatcatcc caggggcagc agtagctgtt gtcccaggcg ggctcacttc
     5401 ccttctcttt tagatctttg actccaatca atagaagtga cagaaatata cagagagata
     5461 aatacataga gaaaattatc agggtcccaa ccatacattc atgcacctga agagaccata
     5521 tggaccccag tcatagatcc tgaccacctg caactcattg gcatcctaaa cagaaggtgc
     5581 cttaaccaaa cttaactcta gaggtgacaa accaggcaac tttcaatttt gatccatttt
     5641 tgggctggag gtgtcagatt ctttaaaagc attggccatc aaagagattt catgaggaac
     5701 atctcaggtt gtacaactct cagagttctt gaccattaca ttctttcc
//
