LOCUS       XM_039106540            2130 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sodium/nucleoside cotransporter 2-like
            (LOC120101644), transcript variant X1, mRNA.
ACCESSION   XM_039106540
VERSION     XM_039106540.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106540.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2130
                     /gene="LOC120101644"
                     /note="sodium/nucleoside cotransporter 2-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 ESTs, 1 long SRA read, 9 Proteins, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 25 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:120101644"
                     /db_xref="RGD:41172918"
     CDS             457..1518
                     /gene="LOC120101644"
                     /codon_start=1
                     /product="sodium/nucleoside cotransporter 2-like isoform
                     X1"
                     /protein_id="XP_038962468.1"
                     /db_xref="GeneID:120101644"
                     /db_xref="RGD:41172918"
                     /translation="MAKSEGRKSASQDTSENGMENPGLELMEVGNLEQGKTLEEVTQG
                     HSLKDGLGHSSLWRRILQPFTKARSFYQRHAGLFKKILLGLLCLAYAAYLLAACILNF
                     RRAQALFVITCLVIFILACHFLKKFFAKKSIRCLKPLKNTRLRLWLKRVFMGAAVVGL
                     ILWLALDTAQRPEQLISFAGICMFLLILFACSKHHSAVSWRTVFWGLGLQFVFGILVI
                     RTEPGFNAFQWLGDQIQIFLAYTLKGSSFVFGDTLVQSVFAFQSLPIIIFFGCVMSIL
                     YYLGLVQGVIQKNTWLLQITMGTTAAETLAVAGNIFVGMYLAERHQHGFFLRPREDKE
                     SSLRNLAKCCYLYTSTVCA"
ORIGIN      
        1 tcctccaggg agcttgtcag ttattctttg ggaaaaatgg tgtattttca ctggtaatga
       61 gataagtata tgttaagctc aactaagaaa cacgttttca agaagcccct cccctagagt
      121 gggtggcact tttcaatggt aaccacctac ataaaaggaa gtctagttgg gaaactgttc
      181 tgttccttgc ccagaagtct tgctgaaggg aaacctccac ttcctgcttg tgagagtatt
      241 aatccctgct gcagctgtcc atccccactg acatcagact ccagtttctc caggatccag
      301 tgtgttctga agatcagcag ctctcccgga gtcttcaagg cgccagattt ggaagtctga
      361 ggcatctggc tttgtaacct gagcagctgc caggttccag ccattatctg actgggctgt
      421 gcggacccac ccagcacatt cagaggataa caggagatgg cgaagtcaga gggaagaaag
      481 tctgcttccc aggacacatc ggagaatggc atggagaacc caggcctgga gctcatggaa
      541 gtcggaaacc ttgagcaagg caaaacactg gaggaagtga cacagggaca tagcctgaag
      601 gatggcttgg ggcattcctc tctctggagg aggattcttc agcccttcac caaggcgaga
      661 agtttctatc aaagacatgc tggtttattc aaaaagatcc tgcttggtct cttgtgttta
      721 gcgtatgctg cctacctcct ggcagcttgc atcctgaact tccggagggc acaggccttg
      781 tttgtcatca cctgccttgt catcttcatc ctggcttgcc actttctgaa aaaattcttt
      841 gctaaaaagt caataagatg cttgaagccc ttgaaaaaca cccgcctgag actttggctt
      901 aagagggtgt tcatgggagc cgctgttgtc ggccttattc tctggctggc tctggacaca
      961 gctcaaaggc cagagcagct gatctccttt gcgggaatct gcatgttcct cctcattctc
     1021 tttgcctgct ccaaacacca cagtgcggtg agctggagga cagtgttttg gggcctgggc
     1081 cttcagttcg tctttgggat tttggtcatc agaactgaac ctggatttaa tgcatttcaa
     1141 tggctgggag atcagatcca gattttcctg gcatataccc taaaaggatc cagttttgtt
     1201 tttggtgaca cactggtcca aagtgttttt gcttttcagt ctctcccaat cattattttc
     1261 ttcggatgtg tgatgtctat tctctactac ctgggccttg tgcagggggt gatccagaag
     1321 aatacctggc tcctgcaaat caccatgggt accacagctg cagagaccct ggctgtggca
     1381 ggaaacatct ttgtggggat gtacttggct gaacggcacc aacatggctt ctttctcagg
     1441 ccccgggaag acaaggagtc cagcctcagg aatcttgcta aatgctgtta cctctatacc
     1501 agcactgtgt gtgcctgagg ctggtggggc cattccatga cagttcttat agaacagatt
     1561 tgtattacca aatacatgtt catgtactta ggcttcccat tctctgagaa ccgcactaaa
     1621 ctccacaaaa tgaaagtcct gatctcactg tggctctgta taaaaaccag cacccacctt
     1681 tccactggcg tgccgcatag cagatgtgaa attcattata gaccctcctg agccaaagta
     1741 tggtgggaat gtagctaaag gggaaatatg tttgtggtaa gtgctaggat ggagattcaa
     1801 cccctggcca gggccagagt ggggagagtg gggaaatcca agtagatgct tagatttaac
     1861 ttggggatgg tggcacaccc ctgtggtcgc ttacctgaag ctcagagcta aggggattgc
     1921 ctcagatcga aggcaagcct ggcctgaacc ctgaagtctt tcacagaagt gatagagtag
     1981 aggccatgtc ctcgggcagg gatggaggtg agggaatatg ggaaacactt gtgaatactt
     2041 aatgataaca tattttttat tgctaaagat tgtatactta aaaactcttc gttttcatac
     2101 agtaataaaa agatttctgt gatagtgttt
//
