LOCUS       XM_039106248            2012 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus MLV-related proviral Env
            polyprotein-like (LOC120101542), mRNA.
ACCESSION   XM_039106248
VERSION     XM_039106248.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106248.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2012
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2012
                     /gene="LOC120101542"
                     /note="MLV-related proviral Env polyprotein-like; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:120101542"
                     /db_xref="RGD:41260220"
     CDS             24..1910
                     /gene="LOC120101542"
                     /codon_start=1
                     /product="MLV-related proviral Env polyprotein-like"
                     /protein_id="XP_038962176.1"
                     /db_xref="GeneID:120101542"
                     /db_xref="RGD:41260220"
                     /translation="MESSAHSKPLKVKTPTWLLLVLLWPRVSGGISPHHIYNITWIVT
                     NLMTGRLANATSVRGTLADAFPPLYFDLCDVIDYKWEPGTTHNWHPSTTYYGCGPASH
                     SKEIYVCPGHRVSRQYGGPGSGYCAQWGCETTGDAYWKPSSSWDLITLKRDGRPPYTL
                     CKRDAKCNPLVLHFTDSGRRATWDGPKSWGLRLYVTGTDPVGLFSLNRQVSPLATRPI
                     GPNPVLPDQKPPSLPAQAQPPSLPKVTQAPGSTPTSPFSTTGGSTILISPSPGTGDRL
                     FNLVAGAYLALNYSDPFRTQECWLCLVSGPPYYEGVAVIGNYTNLTAAPDSCANTPSH
                     RLTLPEVSGRGLCLGNVPPTHQTLCNTTQKIPIGNYFLAAPKGTYWACNTGLTPCISA
                     TVLNQSSDYCVLVEIWPKVTYHESEYIYSFFEKQTRFRREPATLTLALLLGGITLGGV
                     AAGIGTGTTALIETGHFRQLQAAMNADLKAIEESVSALEKSLTSLSEVVLQNRRGLDM
                     LFLREGGLCAALKEECCFYADHTGIVRDNMAKLRERLAQRQKLFDSQQGWFEGWFNRS
                     PWFATLLSTLMGPLLILLLILLFGPCILNRLVQFMRDRLSVIQTLVLTQQYHRLRQQE
                     TEIS"
ORIGIN      
        1 aatcacaaca ctacacccca gacatggaga gttcagcgca ctccaaaccc cttaaagtta
       61 aaactcctac gtggctcctc ctagtccttt tgtggcctag agtcagtggg ggaataagcc
      121 cccaccacat ttataacatt acctggatag tcactaatct catgacagga aggctggcta
      181 atgctacctc cgtaaggggg acactggccg atgccttccc tcccttatac tttgaccttt
      241 gtgatgtgat agactacaag tgggagcctg gcactaccca taattggcat ccctcaacca
      301 cctactatgg ttgcggtccg gcttcccaca gcaaagagat ctacgtttgc cctggacaca
      361 gagtgagccg gcagtacgga gggccgggga gtgggtactg tgcccagtgg ggatgtgaga
      421 ctactgggga tgcgtattgg aagccatcct catcttggga cctgataact ctgaaacgag
      481 acggtcggcc tccttacacc ttgtgtaaac gggacgcgaa atgcaatccc ctcgtcctcc
      541 acttcaccga ctcaggtaga agagcgacct gggacgggcc caaatcttgg ggcctgcgct
      601 tatacgtcac agggaccgat ccggtgggtc tgttctctct aaatagacaa gtctctcccc
      661 tggccactcg acccattgga cccaacccag ttctaccaga tcagaagcct ccctcgctcc
      721 cggcacaagc ccaacccccg tcattgccta aggtcaccca ggcccctggt agtactccca
      781 caagcccctt ctccacaacg gggggctcca ccattttgat ctccccatcg ccaggcaccg
      841 gggatcgatt attcaatttg gtggctggtg catatctggc tctcaactat tcagaccctt
      901 ttaggactca ggagtgctgg ttgtgtctcg tttccggtcc gccctattat gaaggggtag
      961 cagtcattgg aaattacacc aacctgactg ctgccccaga cagttgtgcc aataccccca
     1021 gccacagact aactctgccc gaggtctcgg gacgagggct ctgcttgggg aatgtacccc
     1081 ccacacacca gaccctctgc aacaccactc agaagattcc catcgggaac tacttcctgg
     1141 cagccccaaa aggcacatac tgggcctgca ataccggact aacaccctgt atctcagcca
     1201 cagtcctcaa ccaatcctct gactattgtg tattagtaga aatttggccc aaagtcacct
     1261 accatgaatc cgagtatata tactcgtttt ttgagaaaca gactcgtttt cgacgagagc
     1321 ctgccaccct gactttagct ttactcctag gaggaatcac cttgggggga gtggccgcgg
     1381 gtatagggac cgggaccact gcactcattg aaactggcca tttccgtcag ttacaagcag
     1441 ccatgaatgc agatcttaaa gctatagaag agtctgtgag tgcattagaa aagtccttaa
     1501 catcgttgtc tgaagtggtc ctccaaaata gacgagggct agatatgttg ttcctccgcg
     1561 agggtggatt atgtgctgct ctaaaagaag agtgctgttt ctatgcagac catactggaa
     1621 tagtaagaga taatatggct aagcttcgag aacgcctggc ccaaagacaa aaactgtttg
     1681 attcccaaca gggatggttc gaggggtggt ttaaccgatc cccttggttt gctaccctcc
     1741 tgtctaccct gatgggaccc ctacttattc ttctcctaat tcttcttttt ggaccctgca
     1801 tccttaatag gctggtacag ttcatgaggg atagactttc agtcattcag accctcgtac
     1861 tgacgcagca gtaccatagg ctgagacaac aagagacaga aatttcttga ccaagttgag
     1921 tgaaagattt cactcaaagt tagcaaaaaa atgggggaat gaaagacccc agcttagcag
     1981 cagtaacgcc attttgcaag gctgtactta ag
//
