LOCUS       XM_039106237            1236 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus spermidine synthase-like
            (LOC120101528), mRNA.
ACCESSION   XM_039106237
VERSION     XM_039106237.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106237.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-445               JACYVU010000115.1  12166369-12166813
            446-446             "N"                1-1
            447-1236            JACYVU010000115.1  12166814-12167603
FEATURES             Location/Qualifiers
     source          1..1236
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1236
                     /gene="LOC120101528"
                     /note="spermidine synthase-like; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: inserted 1
                     base in 1 codon; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 7 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:120101528"
                     /db_xref="RGD:41302246"
     CDS             47..1042
                     /gene="LOC120101528"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:458..460,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: spermidine synthase-like"
                     /protein_id="XP_038962165.1"
                     /db_xref="GeneID:120101528"
                     /db_xref="RGD:41302246"
                     /translation="MTIYIRILSFKKVNKPVVLGLRAACSPGPSTRAARPPWSLAPAA
                     IREGWFRETCSLWPGQALSLQVEQLLHQRRSRYQDILVFRSKTYGNVLVLDSVIQCTE
                     RDEFSYQEMIANLPLCSHPNPRKVLIIGGGDXGILXEVVKHPSVESVVQCEIDEDVIE
                     VSKKFLPGMAVGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESC
                     YQLMKTALKEDGILRCQGECQWLHLDLIKEMRHFCKSLFPVVSYAYCTIPTYPSGQIG
                     FMLCSKNPSTNFREPVQQLTQVQVEQMQLKYYNSDMHRAAFVLPEFTPKALNDIS"
ORIGIN      
        1 gcgccctctt ctggcctatt tgggcactgc atgcacatgg cgcgaaatga ccatatacat
       61 aagaattcta tcttttaaga aagtaaacaa gccagttgtg ctggggctcc gcgcagcctg
      121 cagtccaggg ccctcgacgc gcgccgcccg cccgccatgg agcctggccc ccgctgccat
      181 ccgtgaaggt tggttccgag agacctgtag cctgtggcct ggccaggccc tgtcgctgca
      241 agtggagcag ctgctgcacc agcggcgctc gcggtaccaa gacatcctcg tcttccgcag
      301 taaaacctac ggcaacgtgc tggttctgga tagcgtcatc cagtgtaccg agagggacga
      361 gttctcctac caggagatga tagccaacct gccgctctgc agccacccca acccgcggaa
      421 ggtgctgatc atcgggggtg gagatngggg catcctatag gaagtggtga agcacccctc
      481 tgtggagtct gtggtccagt gcgagatcga tgaggatgtc attgaagtct ctaagaagtt
      541 cctgcctggc atggccgttg gctactccag ctcaaagctg actctccacg tgggcgatgg
      601 ctttgagttc atgaaacaga accaagatgc cttcgacgtc atcatcaccg actcctcaga
      661 ccccatgggc cctgctgaga gcctcttcaa ggagtcctgt taccagctca tgaagacagc
      721 cctcaaagaa gatggcatcc tccgttgcca gggcgagtgc cagtggctgc acctggacct
      781 catcaaggag atgaggcact tctgcaagtc tctcttccct gtggtgagct atgcctactg
      841 taccattccc acctatccca gtggccagat tggcttcatg ctgtgtagca aaaacccgag
      901 caccaacttc cgggagcccg tgcagcagtt gacacaggtc caagtggagc agatgcagct
      961 gaagtactat aactcagaca tgcaccgcgc agcctttgtg ctgcccgagt tcaccccaaa
     1021 ggccctgaat gacataagct gaatccaggt gccactgtaa caccacccga gacctcagtc
     1081 ggattggacc aaggagcttc caaagttgtc tggggaccag cagtcctgga ccagactccc
     1141 agatgaccct tgcccaccaa ccaagtgtta caggccccag aatgctgcct ggcctgccct
     1201 gctgggtgga ctcagtctct gtgtctatct ctgtgg
//
