LOCUS       XM_039103945             618 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus glyceraldehyde-3-phosphate
            dehydrogenase-like (LOC120101052), mRNA.
ACCESSION   XM_039103945
VERSION     XM_039103945.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103945.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 10% of CDS bases
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-519               JACYVU010000078.1  6239382-6239900
            520-618             JACYVU010000078.1  6239902-6240000
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..618
                     /gene="LOC120101052"
                     /note="glyceraldehyde-3-phosphate dehydrogenase-like; The
                     sequence of the model RefSeq transcript was modified
                     relative to its source genomic sequence to represent the
                     inferred CDS: deleted 1 base in 1 codon; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 14 Proteins, and 16% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:120101052"
                     /db_xref="RGD:41116120"
     CDS             1..618
                     /gene="LOC120101052"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:547..549,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: glyceraldehyde-3-phosphate
                     dehydrogenase-like"
                     /protein_id="XP_038959873.1"
                     /db_xref="GeneID:120101052"
                     /db_xref="RGD:41116120"
                     /translation="MVKVGVNGFGHIGRPQDSNASCTTNCLGPVTKVIHDNFGIMEGL
                     MTTVHAITATQKTVDRPSGKLWCDGYGAAQNIIPASTGAAKVVGKVIPELNGKLTGMA
                     FRVSTPNVSIVDLTCRLEKPAKYHDIKKVVKQASEGPLKGILGYTEDQVVSCNFNSNS
                     HSSTFDAGAGIALNDNFVKLVSXYDNEYGYSNRVVDLMAYMASKE"
ORIGIN      
        1 atggtgaagg tcggtgtgaa tggatttggc catattgggc gccctcaaga tagtaatgca
       61 tcctgcacca ccaactgctt aggccccgtg accaaggtta tccatgacaa ttttggaatc
      121 atggaagggc tcatgactac agtccatgcc atcactgcca ctcagaagac tgtggataga
      181 ccctctggaa agctatggtg tgatggctat ggggcagccc agaacataat ccctgcatcc
      241 actggtgctg ccaaggttgt gggcaaggtc atcccagagc tgaatgggaa gctcactggc
      301 atggccttcc gtgtttctac ccccaatgta tccattgtgg atctgacatg ccgcctggag
      361 aaacctgcca agtatcatga catcaagaag gtggtgaagc aggcatccga gggcccacta
      421 aagggcatcc tgggctacac tgaggaccag gttgtctcct gcaacttcaa cagcaactcc
      481 cactcttcca cctttgatgc tggggctggc attgctctca atgacaactt tgtaaagctt
      541 gtttcctagt atgacaatga atatggctac agcaacaggg tggtggacct catggcctac
      601 atggcctcca aggagtaa
//
