LOCUS       XM_039103940            2200 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus translation initiation factor
            IF-2-like (LOC120101048), mRNA.
ACCESSION   XM_039103940
VERSION     XM_039103940.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2200
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2200
                     /gene="LOC120101048"
                     /note="translation initiation factor IF-2-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 98% coverage of the annotated genomic feature by
                     RNAseq alignments, including 28 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:120101048"
                     /db_xref="RGD:41074779"
     CDS             1319..2200
                     /gene="LOC120101048"
                     /codon_start=1
                     /product="translation initiation factor IF-2-like"
                     /protein_id="XP_038959868.1"
                     /db_xref="GeneID:120101048"
                     /db_xref="RGD:41074779"
                     /translation="MVTSRPYSRHSPSQARTPTPSQPEALFLTPRPELELLGRVAQGD
                     PSVFLAQLGRSGEARLRKGRGSGLWFESSGGESACPAAQDALPYPARNPLLSRSPSDP
                     GSRKVLSSEVSSHDASPPTSWGPVPSAPPPPAARPVPEAETDPSPAPLSSTAPGRVRQ
                     GEGGRRGRPLAWPASALGPGWPQVTPAQDPAWGVGLELEGPCPEMFGLLGDERAGGTP
                     GGLGLCPTSNPWGGGPASGKLSDSQGGVSEGHCCPPVAKQPSTFQYLLPPSRNRGDGL
                     CRSCPLSSPGITAVNAT"
ORIGIN      
        1 gcttcccctt ccactggtgc ccttactagg cttttcattg ctacctatga ggttggagcc
       61 cagggtcagt ccatgtatag tctttgggta gtggcttagt ccctggaagc tctggttgct
      121 ttattaccag gattttgaca gtattaataa tcactaaatg caaagtagaa tagattgtcc
      181 ctcaagagca gtcatgcctt cctggtcact acaggtgtta ggataaagca aggagccctt
      241 gtagagcccc taggtgtttg tctctccctg gacacacaca caaactttgt taggaatttt
      301 gagaaaaatc ttcagatctc cagttgcctg ttagggagat ggtggccttc ccacttgaaa
      361 acaaaataac agaagtctag gtacatatgt atgtggcggt caaagaacaa ctttgtagtc
      421 cgtccacctt tgcatgggtt ccggaatcaa acccaggtaa tcatgcttga ttaggaagca
      481 cctttgtcca ctcagcctct ccaagatcct tctcagggat ccaggcctcc ctactttgac
      541 atcagtaggc aactgaggct cagtgaggtt tagacaaagt gcagggacag ctctcaaatc
      601 ggggttttgt gattgcggct gccttgccta cacaggtgaa aacagaagca gaggggctaa
      661 ggcagaggac agtggaagag gtgggctggc tttcctgacc taccccatcc cttccccaat
      721 gtctcaagtc acacaaagaa ggctcagtcc tggcagctca cgctcaggca gtctgtgccc
      781 accccctcct tcctgggcct ggctgcaaca ctcagtcact cagctcctga caggggacaa
      841 tgaccacact gtggagccac acaactatca cagcgctgct gtgactgagc taaacccact
      901 tgggagtcac ctcacccact ttctggaaca gccccttcct ccttgtgacc agctgaccct
      961 taggccctgc agacacctcc ctgtgactcg aggtgatcca acaggccttt gtactctgct
     1021 cccctgagat ctaggcaaga atcactcttt gggcaacacc ttttccttaa ctttaaagcc
     1081 atgaaggaag atccgggccc cagctttctg cccaaccccc taacactccc aaaagggtag
     1141 gaggcagagt tggggattgg ggtgttttgt tctttttttt tctccccctt tcactctcag
     1201 acccacatac accacagagg agcaggatct ttcctagtct tctcaacctc ttagctcaga
     1261 tcagctccaa aacccgtcta gggcggcgtc ctgacccgcc aagcagtagc agcccccaat
     1321 ggtcacatcc cgcccctatt cccgccattc cccatcccag gccagaactc ccacccctag
     1381 ccagcctgag gccctgttcc ttactccccg cccggaactg gagcttctgg gtagagtcgc
     1441 tcagggagat ccaagtgtgt tcctggccca gctagggagg tccggagagg caagactcag
     1501 aaagggaagg ggctctgggc tgtggttcga gagctcagga ggcgagagcg cctgccccgc
     1561 ggcacaggac gctctcccat accccgcccg gaaccccctc ctgagccgtt ccccgagcga
     1621 tccgggaagc aggaaagtgc tctcctccga ggtcagttcc cacgacgcct cgccacccac
     1681 cagctggggc cccgtacctt ctgctccgcc gcctccagct gcgcggccgg tgccggaggc
     1741 tgagactgac ccgagccccg ccccactctc cagcaccgct ccggggcggg tccgtcaagg
     1801 ggaggggggt cgacgggggc ggcccttagc atggcccgcc tccgctctgg gccccgggtg
     1861 gccgcaggtc accccggctc aggacccggc atggggcgtg gggctggagc tggagggacc
     1921 atgtccagaa atgtttggat tgctgggtga tgagagggcg ggtgggaccc ccggaggact
     1981 cggcctctgc cccacttcca acccgtgggg gggcggaccc gcttcgggaa agttgagcga
     2041 ctcccagggt ggggtcagcg agggccactg ctgccctccc gtggccaagc agccctcgac
     2101 gttccagtat ctcctacccc ctagccgtaa ccgaggggac gggttatgca gaagctgccc
     2161 actctcttct ccaggaatca ctgcagtaaa tgcaacgtga
//
