LOCUS       XM_039103902             969 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L6-like
            (LOC120100998), mRNA.
ACCESSION   XM_039103902
VERSION     XM_039103902.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103902.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..969
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..969
                     /gene="LOC120100998"
                     /note="60S ribosomal protein L6-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 28 Proteins, and 72% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:120100998"
                     /db_xref="RGD:41357925"
     CDS             1..846
                     /gene="LOC120100998"
                     /codon_start=1
                     /product="60S ribosomal protein L6-like"
                     /protein_id="XP_038959830.1"
                     /db_xref="GeneID:120100998"
                     /db_xref="RGD:41357925"
                     /translation="MMHRTEGEKAEKPDKKEKKPAALKAGGDAAAPHPPRARPAGAVK
                     KGSPKAKKLRKSKPLCSRNPVLVSRIGRYSRSAMYSRKALYKRKYSAVKTKVEEEKKK
                     KKEKVFATITKMVGGDKNGGTLVVKLRKMPRYYTTEEVPRKLLSHGKKPFSQHVRRLH
                     SSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVKREYLLCHRIQRSPS
                     IPVTSCKCTFAIGNVSTRGYILGHTVVYYGFNDGMSAMVCFAVLVVASFGCFCLFYFE
                     GLQQR"
ORIGIN      
        1 atgatgcaca gaacggaggg tgaaaaggca gagaagcctg ataaaaagga gaagaaacct
       61 gcagccctga aggctggcgg tgatgctgct gccccccacc cccctcgggc ccggcccgct
      121 ggtgcggtca aaaagggtag tcctaaggct aaaaagctga ggaagagtaa gcccctttgc
      181 agccgaaacc ctgtcctggt gagcagaatt ggcaggtact cccgatctgc tatgtattcc
      241 agaaaggcct tgtacaaaag gaaatactct gctgtcaaga caaaggtgga ggaggagaag
      301 aagaagaaga aagaaaaggt ctttgctacc atcacaaaaa tggttggtgg ggacaagaac
      361 ggtggcaccc tggtggtgaa gcttagaaaa atgcctaggt attatactac tgaagaagta
      421 cctcggaagc tgctgagcca tggcaagaag cccttcagcc agcacgtgag gaggttgcac
      481 tccagcatca ctcctgggac tgtactgatc atcctcactg ggcgccacag gggcaagaga
      541 gtggttttcc tcaagcagct aggcagtggc ttgctacttg tgactggacc tcttgccctc
      601 aacagagtga agagagaata tttactgtgt cacagaatcc agagatctcc atccattcca
      661 gtgaccagtt gcaaatgtac atttgcaatt ggaaatgtat ctacaagagg atacattctg
      721 ggacacactg ttgtatatta tggcttcaat gatgggatgt ctgctatggt ttgttttgct
      781 gttttggttg ttgcttcttt tggttgtttc tgtttgtttt attttgaggg gctgcagcaa
      841 aggtgaagtg agtgtatgag aggaagagag gatatgtaag actggtttaa ataatgtgta
      901 acaccaaaag aatcagttac aaaaattaaa ttgttatttg tgtgtgtgtg tgtgtgcatc
      961 tgtgtgtgt
//
