LOCUS       XM_039103901             531 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus protein crumbs homolog 3-like
            (LOC120100997), mRNA.
ACCESSION   XM_039103901
VERSION     XM_039103901.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086020) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 34% of CDS bases
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-71                JAXUCZ010000002.1  69727616-69727686
            72-327              JAXUCZ010000002.1  69728546-69728801
            328-329             "NN"               1-2
            330-503             JAXUCZ010000002.1  69728802-69728975
            504-531             JAXUCZ010000002.1  69730633-69730660
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..531
                     /gene="LOC120100997"
                     /note="protein crumbs homolog 3-like; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 2 bases in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein"
                     /db_xref="GeneID:120100997"
                     /db_xref="RGD:40994990"
     CDS             1..531
                     /gene="LOC120100997"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:310..312,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: protein crumbs homolog
                     3-like"
                     /protein_id="XP_038959829.1"
                     /db_xref="GeneID:120100997"
                     /db_xref="RGD:40994990"
                     /translation="MVALTDQCILARKLVRIPKKEIHSNSSPKLIETPGRGLLLVFDL
                     LILPSAWSLPTLEPFTNRTPQPPGDRSNAGLSSEAIVAITMVFSTLGVLLIAVELFLL
                     RXKVLESXAKRGHLGPSSEEQFSYKATEAQVPQGSPEPVWGCLPYSSSPPFLSSIFPS
                     LLCDFVGRNKNAEEPQ"
ORIGIN      
        1 atggttgcac tcactgatca gtgcatatta gcgcgaaagc ttgttcgaat acctaagaaa
       61 gaaattcaca gcaactcatc acccaagctc atagagactc caggccgggg gctgctcttg
      121 gtatttgact tgctgattct gccctctgcc tggagcctac caacactgga gcctttcaca
      181 aatcgcacac ctcaaccccc aggagacagg tccaatgcgg gtctgtcttc agaggctatt
      241 gtagccatca caatggtctt ttccactctg ggagtccttc tcatagcagt ggagctgttc
      301 ctgctaaggt gaaaagttct agaaagcnnt gcaaagagag ggcacctagg gcccagcagc
      361 gaggagcagt tttcctacaa agctactgaa gcccaggtcc cccagggctc ccctgagcca
      421 gtgtggggct gcctgcccta tagctcctcc cctcctttcc tgtcatcaat cttcccttct
      481 ttactatgtg attttgtggg aaggaacaaa aatgcagagg agcctcagtg a
//
