LOCUS       XM_039103728            2588 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus rap guanine nucleotide exchange factor
            6-like (LOC120100852), transcript variant X1, mRNA.
ACCESSION   XM_039103728
VERSION     XM_039103728.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2588
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2588
                     /gene="LOC120100852"
                     /note="rap guanine nucleotide exchange factor 6-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 168 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:120100852"
                     /db_xref="RGD:41226884"
     CDS             716..1264
                     /gene="LOC120100852"
                     /codon_start=1
                     /product="rap guanine nucleotide exchange factor 6-like
                     isoform X1"
                     /protein_id="XP_038959656.1"
                     /db_xref="GeneID:120100852"
                     /db_xref="RGD:41226884"
                     /translation="MASYVDNSFRQAVMKNPAERTPQDLEIVYSYLHGMEALSNLREH
                     QLRLMCETVRYERHEANEVLYYPDDIGTCWYILLSGSVFIKESMFLPRSSFGKRSAGS
                     FRRGCECIVLEPSEMIVVDYMDENEEYFQRPSPTDSLERRFRKINQKGERQTIIDTVD
                     LTCGQATSTRGYHTECTKSQVL"
ORIGIN      
        1 agaaggaaga ggcggggaag aagaggcggt cgccgttcag cagacgcttg gcggggctgc
       61 gcgctccgct ctcggcctcg cgcccgccgg gggacccgcg tctggcccgc cgcgcccgcc
      121 cgcccgccgc acggacgacg cacaaagttg cctagagcgc gggggccgcg cggggagcag
      181 ccgcgctcgg gcgccgatgg aggcgggcgg ccggagctgc gcggcccgcg gggatgcagc
      241 agcagtcggg aggcgcggcc gacagtagac ggaggcgcgg cgcggcatcg gcggccgagg
      301 ccagcgggct tggtggcgcc cagacctgag ccgggctcat caggctcagt gcaccgccct
      361 ccctctcgac cggcgcgcga ggacccggga cgcgtcagag cgagcgcggc cggagcgggt
      421 agagccaggg ccccgccgga gaggctccgc ccgccgtcgc ttgcacctcc ctaaaaataa
      481 ctcggcccgc cggggccagc gcgatccgcg accgttccgg agcgctgctg ggcagtctct
      541 gagtctgagt ctacggacaa caagccgcga gaaggagggc agctcggggc tgcacggacc
      601 cttcgtgctg tctgcgcccc ggccccgcgc ctgggctggt ttgcctcggg cagtggcgct
      661 gggcccggag gccggcgagt gtgtggagtg gtcccggtgc gccccgcagg gggagatggc
      721 gtcctacgtg gataatagct tccgccaagc ggtgatgaag aaccccgccg agaggacccc
      781 ccaggacctg gaaatagtgt attcctattt acatggtatg gaagcgctgt ccaacctgag
      841 ggagcaccag ctaaggttaa tgtgtgaaac tgtgaggtat gaaagacacg aagccaatga
      901 agttctatac tatcctgacg atattggcac ctgctggtat atacttcttt ctggttccgt
      961 gttcattaag gagtccatgt ttcttccgag aagcagtttt ggcaagcgct ctgcaggaag
     1021 ctttaggcgt ggctgtgaat gcattgtctt agagccttct gaaatgatcg tggtggacta
     1081 tatggatgaa aatgaagaat attttcagcg cccaagcccc acagacagtc tcgaaagaag
     1141 atttagaaaa atcaaccaga aaggtgaaag acagacaatt atcgacacag tggaccttac
     1201 ctgtgggcaa gccacctcta ctagaggcta tcacacggaa tgcactaaat ctcaggtatt
     1261 gtaatccgtg tggtgtctca gcattaaccg gagtctgtgt gtgagtttgc aatgttacta
     1321 atgaattaca gtgctgatgt tgtctgctcg gtctcgtcct gctatgtttc gccctgatgg
     1381 agtttaactt gtgcgtaatt tggaagtgtt ggtttaggta gaggtagcac agagtaggct
     1441 tcattcgtgc tattctgcct acaggcaggt cattacctga agaatacaag tgcaatttaa
     1501 ttatttttaa gagtggttga agcactgttt cttttaactc ggtttgcaaa taagaaaaaa
     1561 aaaaaaaacc aaaaaaaaaa accaaaaaaa aaaaaacacc attggaattg tcccgccttt
     1621 cttgtgggaa agctcatggg aaattcctta gaaacttaca ttttaattgt tctattgata
     1681 aaaagcaagg ttagaaatcc cagaatgaga gcatttgggg aatatactgg ggaaatttca
     1741 tttacattaa aaatcaaaac caggcttatt caaaagaaga aatgggggct tcaaatttct
     1801 tactgtgttt tcttatttgc cccttgattt taactggact tcatgctttg gtttgcctgc
     1861 attttaatca agaggcccac aataccctag ctcatttctt aatgtctgcg acaactaatc
     1921 tgtgattttc agagtcgggc tgctgaagtt gtggttcatg tttggcttag tgatttcaat
     1981 atggaagaaa aactgatgcc tctacctggg agatggtaga gtgacagtag catttgtggc
     2041 tgtgtacagg aggaaggtca tgagtaatta catttatact aagaaaacct gtcactaata
     2101 tttctgggaa ttgtggcagt cttacgtgaa ataacaggcg atttgtatat attttcaaat
     2161 gaaatgagac ggctccttta tgttctgtcg gggatgctgc agtgccatag ctgctgtagt
     2221 gtcttggaaa ctgctgattt gtacgtgggg aggtgtgtgt gcacacgggt gtgtacattt
     2281 gtttgcagcc caaacctggc tgcattgttc cttagaggta ggtttcttga taaacctgga
     2341 gcctgcttta tcagctgggc tagcaaccag caagccttcg tgaacctcct gtctcttctc
     2401 tcaacagttt tgaggtgtgc attgggccac accccgcttg attttttttt ctaaaagact
     2461 tttattttct tttgtgtatg aatgtttcgc caacatctat gtatgtgtac cacttacttg
     2521 cctggtgcct agaaagttca taaacggtat cagataccct gtaactggaa ttagggacag
     2581 tcgtgagc
//
