LOCUS       XM_039103698            3211 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus vomeronasal type-2 receptor 1-like
            (LOC120100835), mRNA.
ACCESSION   XM_039103698
VERSION     XM_039103698.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103698.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3211
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3211
                     /gene="LOC120100835"
                     /note="vomeronasal type-2 receptor 1-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 21 Proteins, and 39% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:120100835"
                     /db_xref="RGD:41300872"
     CDS             412..3183
                     /gene="LOC120100835"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:2974..2976,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: vomeronasal type-2 receptor
                     1-like"
                     /protein_id="XP_038959626.1"
                     /db_xref="GeneID:120100835"
                     /db_xref="RGD:41300872"
                     /translation="MASRKKCLILGLTVFLWLGLYAQNENQNETCRLLRKFNLTGYVE
                     AENHTVVIGGLFPVHYRTMPTSDSDEELESPMCEGFNFRGFRWMKTMLHTIKEINERK
                     DILPEHTLGYQIFDNCFSTTKAMESALVFLTGQEEYKPNLRNSTGKYLVGIIGAGGST
                     MSIAVSRILGDYYIPQVGYASSSPILSDRIQFPNIFRTIPSDKFQSEAIVNLIRHFGW
                     VWVGAIATDDDYGKHGVKSLRKKMELSNLCIAFSETIPKVYSNEKMQIAVNEVKKSTA
                     KVIVLYATDIHLSPFVLEVVHHNITDRTWIASEAWITSALIAKPGYFPYFGGTIGFAI
                     PRSVIPGLKEFLYDVHPSKDPNDILTIEFWQTAFNCTWPNSSVPYNVDHRVNMTGKED
                     RLYAMSDQLCTGEEKLEDLKNTYLDTSQLRITNNVKQAVYLIAYAMDLLSRAGITEDY
                     RENVACPIIPDFESGKLWNYFRKIKFTTHDESKIETDLYGDIESAYYEILSWHMDNAG
                     EVAFVKVGEYKFTPSKYELVLPTNSTLFWKTESYRLPESFCTKVCSPGTRRKNRPGQP
                     LCCFDCIPCEDGYVSEKPGQRLCDPCGEDNWSNPQKNKCVPKLVEFLTYEEALGYALV
                     ILSIFGALVVLAVTVIYITHRHTPLAKANDQELSFLIQMSLVITVLSSMLFIGKPCNW
                     TCVARQVTLALGFCLCLSSILGKTISLFFAYRISKSKTRLISMHPIFRKLIVLMCIVG
                     EIGVCTAYLMLKPPKMVKNIEPQNVKIIFECNEGSIEFLCSIFAFDILLALLCFLTTF
                     VARKLPDNYYEGKCITFGMLVFFIVWISFVPAYLSTKGKFKVAVEIFAILASSYGLXG
                     CLFLPKCFIILLRPKRNTDETVGGRVLAVDRSIQMTSTSVSSELNNNTVSTVLDEENC
                     ELQGTCKDG"
ORIGIN      
        1 aagggagcag aaatggctgg agatgtggct ccacaccgga ttgcctgcct agcataagat
       61 catggagttg gctgcagtga gacttgatga ggctgacaaa accatacaag tgggaacagt
      121 ctctaccact taaagtaaca ttcaaactca atcccatgag tccgtcccta ccattgcaaa
      181 gcatacagga taaccaggta gctcctccca gaggattgct cagctcctat tccagatcca
      241 taaattgcaa ctgattgtga catctgtgtc tacaacatga aatgatttcc tcaggagcag
      301 caagcaggtc actaggttag gcacacgcac actccaacac tccgttacgg tgcttcctta
      361 gaacctgcgt cacttcaaca ctttcattat cctcagggtc accagattaa gatggctagc
      421 agaaagaagt gcttgattct gggattaact gtatttttgt ggcttggatt gtatgctcaa
      481 aatgaaaacc agaatgagac atgcaggttg ctgcgcaaat ttaatttgac tggatacgta
      541 gaagctgaaa accatactgt tgttattgga gggctatttc ctgttcacta taggaccatg
      601 ccaacaagtg actctgatga ggaattagaa tcacccatgt gtgaggggtt taatttccgg
      661 ggtttccgct ggatgaaaac catgctccac accatcaagg agattaatga gagaaaggac
      721 attttacctg aacacactct gggctaccag atatttgaca actgtttctc caccaccaaa
      781 gcaatggagt cagctttggt gtttctaaca ggtcaggaag aatacaagcc taaccttagg
      841 aacagcactg gaaaatacct cgttggaatt attggagcag gaggatcaac aatgtcaatt
      901 gcagtttcga gaattctagg agattattac atacctcagg tgggctatgc ttcatcttcc
      961 ccaattctca gtgacaggat tcaatttcca aacatttttc gcacaatacc cagtgataag
     1021 ttccagtccg aggcaatcgt gaatctgata agacattttg gctgggtctg ggtaggtgct
     1081 attgcaactg atgatgatta tggtaaacac ggagtaaaat cacttaggaa aaaaatggag
     1141 ttgtccaacc tctgcattgc tttctctgaa actattccaa aagtctactc caatgagaaa
     1201 atgcaaatag ctgttaatga agtaaagaaa tccactgcca aagtcattgt gctttatgca
     1261 actgacattc atctcagccc ctttgtgctg gaagtggttc atcataatat aacagacagg
     1321 acatggatag ccagtgaagc ctggattacc tcagctctca ttgcaaagcc tgggtatttt
     1381 ccctattttg gtggaaccat tggatttgca atccccagaa gtgttatacc aggattaaaa
     1441 gaatttcttt atgatgtaca ccctagcaag gatccaaatg atatcttgac cattgaattc
     1501 tggcaaactg cttttaactg tacctggccc aacagcagtg tgccttacaa tgtggaccac
     1561 agagtaaata tgactggaaa agaagacaga ttgtatgcca tgtctgatca gctctgcact
     1621 ggagaggaga aactggagga tctgaaaaat acctatctgg acacatctca gctgagaatt
     1681 acaaacaatg tcaaacaagc tgtgtatctt atagcttatg ccatggatct tttaagcaga
     1741 gctggcataa cagaagatta tagggaaaat gtagcatgtc caattatacc tgactttgag
     1801 tccgggaagc tatggaatta ctttaggaaa atcaaattca ctacacatga tgaaagcaaa
     1861 atagagactg atttatacgg agacatagaa agtgcatatt atgagatact cagttggcac
     1921 atggataatg ctggagaagt tgcctttgtc aaggttggag aatacaaatt cacaccttca
     1981 aaatatgaac ttgttctacc aacgaactca acactatttt ggaagactga atcttacagg
     2041 cttccagaat cattctgcac aaaagtgtgt tctccaggga cccggaggaa aaatcgccca
     2101 ggacaacccc tatgctgctt tgattgcatc ccgtgtgagg atggatatgt gtcagagaaa
     2161 ccaggccaaa gactctgtga cccgtgtggt gaagataact ggtccaatcc acagaagaac
     2221 aagtgtgtgc caaaacttgt ggaattcctc acttatgagg aggctctggg ctatgcactt
     2281 gtcatccttt caatatttgg agcacttgtg gtcttggctg tcactgttat ctatataacc
     2341 cataggcata ctccattggc aaaagccaat gaccaggagc tgagcttcct cattcagatg
     2401 tctctggtta tcacggtgct ctcatccatg ctgttcatag gcaagccatg caattggacc
     2461 tgtgtggccc gccaggtcac tctggcactg ggattttgcc tttgtctgtc ttccattctt
     2521 ggaaagacta tttcactctt ttttgcctat agaatttcaa aatccaaaac ccggcttata
     2581 tctatgcatc ctatttttcg taaactcatt gtgctgatgt gtattgtagg ggagattggt
     2641 gtatgcacag cttacttgat gttgaagcct ccaaagatgg tcaagaacat tgaacctcag
     2701 aatgtaaaga tcatctttga atgtaatgaa ggttctatag agtttctttg ctctatattt
     2761 gcctttgata tccttctggc tctgctgtgt ttccttacaa cctttgtggc tcgcaagctg
     2821 ccagataact attacgaagg gaaatgtatc acttttggga tgcttgtctt tttcattgtc
     2881 tggatctctt ttgtccctgc ttacttgagc accaaaggga aattcaaagt ggctgtggaa
     2941 atatttgcca ttttggcatc cagctatggt ttgtaaggct gtctatttct tcccaagtgt
     3001 ttcattatct tgctgaggcc aaagaggaac actgatgaaa ctgttggtgg aagagtactc
     3061 gctgttgaca ggagcatcca aatgacctca acctctgtga gtagtgagct taacaacaac
     3121 acagtgtcta ctgttctgga tgaggagaac tgtgagctcc aagggacatg caaagatgga
     3181 taatgaccta gataaatttt ctcttaatgt c
//
