LOCUS       XM_039103576            3748 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 728-like
            (LOC120100761), mRNA.
ACCESSION   XM_039103576
VERSION     XM_039103576.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103576.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-190               JACYVU010000066.1  32202041-32202230
            191-317             JACYVU010000066.1  32219246-32219372
            318-413             JACYVU010000066.1  32219825-32219920
            414-1502            JACYVU010000066.1  32228289-32229377
            1503-1575           JACYVU010000066.1  32229461-32229533
            1576-1586           JACYVU010000066.1  32231908-32231918
            1587-2494           JACYVU010000066.1  32256192-32257099
            2495-3748           JACYVU010000066.1  32257101-32258354
FEATURES             Location/Qualifiers
     source          1..3748
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3748
                     /gene="LOC120100761"
                     /note="zinc finger protein 728-like; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     ESTs, 18 Proteins, and 96% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:120100761"
                     /db_xref="RGD:40948588"
     CDS             182..2665
                     /gene="LOC120100761"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:2357..2359,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: zinc finger protein
                     728-like"
                     /protein_id="XP_038959504.1"
                     /db_xref="GeneID:120100761"
                     /db_xref="RGD:40948588"
                     /translation="MAKDMLSFWDVAIYFSGEEWEYLGPAQWNLYRDVTLENYNNLVF
                     LGLASSKPYLVTFLEQIEEPLVVKKGEVTTMYSGKKCYTCKDCGKVFEKKKVFQSHYR
                     LHVRVKTYKCEECGKSFRFPSLLSRHYRVHTGEKPYKCEICGNGFPYPSRLSTHMKTH
                     TGEKPYQCEVCGKAFHNPSILSTHKRIHTGEKPHKCEECGKTFRDSSLLSGHKKIHTG
                     EKPYKCEVCGKDFYFRSKLNIHKKIHTEKNPYKCEVCGKVFDNRSRLSNHMKIHTEEK
                     PYKCEVCGKAFHYLSKLSKHKKIHTEKNPYKCEVCGKAFDYRSKLNKHKKIHIEEKPY
                     KCEVCGKAFHYLYKLSKHKIVHTEENPYKCEVCGKAFDYPSRLSDHKTIHTGEKPYKC
                     EVCGNAFCYSSSLRKHKIIHTGEKPYKCKVCGKGFDYRSRLYKHKKIHTGEKPYKCEE
                     CGKASSIKSYLYLHKHIHTGGKYYICKEYGKVFEGKKVFRNHQIIHLGMKPNKYEECG
                     KSVRFSSLLSEHKRIHAGEKPYKCEVCGKAFCIPLLLSKHKVIHMGKKPYKCEICGKA
                     FKLPSRLSKHEKIHIEEKPYQCKVCGKAFRSPSLLCEHERIHTGDLPCKCDICGKAFR
                     YPSLLSKHKVVHTEDKPYKCQVCGNFLRSQSSLHEHKRMHMGEKPYKCEICGKAFEYP
                     SRVLKHKNVHSEEKPYKCKLCGKTFRSPSAFRVHKRKHPGEKPXNCEVCGKAFHYPTI
                     LSNKKIHTREKPYKYEDCGKALNYPSILSKHKIIHTEENPYKCEVCRKVFNYPSRLYK
                     QNRIHTWEKPYKNLTNMKYVAWPSIVHTF"
ORIGIN      
        1 gggagcagcg ccgttttgca gatctgagaa actgtgtagg gtggcgggta gcacgccgtg
       61 ggagctgact tggatttgtt gtgagactag ggaagttgtt gacctggagg tgctgtgctg
      121 cttagactgg accactgccc ctgagcacag gtttgaaggg gagaaggttg aaaacaacag
      181 gatggccaag gatatgttgt cattctggga tgtggctata tatttctctg gagaggagtg
      241 ggaatacctg ggtcctgctc agtggaattt atacagggac gtgacattgg agaattacaa
      301 caaccttgtg tttctgggtc ttgcttcctc taagccatac ctggtcacat ttctggagca
      361 aatagaggag cctttagttg tgaagaaagg agaggttacc actatgtatt cagggaaaaa
      421 atgttatacc tgcaaagact gtgggaaagt ttttgagaag aaaaaagtat ttcaaagtca
      481 ctacagactt catgtaagag tgaaaaccta caagtgtgaa gaatgtggca agtccttccg
      541 ttttccgtca ttactttcta gacactacag agttcataca ggagaaaaac cctacaagtg
      601 tgaaatatgt ggcaatggct ttccttatcc ttcaaggctt tccacccata tgaaaactca
      661 tacaggagaa aaaccatacc agtgtgaagt atgtgggaag gccttccata atccatcaat
      721 actttctacg cacaagagaa ttcatacagg agagaaaccc cacaaatgtg aagagtgtgg
      781 caagactttc agagattcat cattactttc ggggcacaag aaaattcata caggagagaa
      841 accctacaag tgtgaagtat gtggcaagga cttctatttt cgatcaaaac ttaatataca
      901 caagaaaatt catacagaaa aaaatcccta caagtgtgaa gtatgtggca aggtctttga
      961 taatcgatca aggctttcca accatatgaa aattcataca gaagagaaac catacaagtg
     1021 tgaagtatgt ggcaaggcct tccattatct atccaaactt tctaaacaca agaaaattca
     1081 tacagaaaaa aatccctaca agtgtgaagt atgtggcaag gcctttgatt atcgatcaaa
     1141 acttaataaa cacaagaaaa ttcatataga agagaaacca tacaagtgtg aagtatgtgg
     1201 caaggccttc cattatctat acaaactatc taaacacaag atagttcata cagaagagaa
     1261 tccctacaag tgtgaagtat gtggcaaggc ctttgattat ccatcaaggc tttccgacca
     1321 taagacaatt catacaggag agaaaccata caaatgtgaa gtatgtggaa atgccttctg
     1381 ttattcatca tcacttcgta aacacaagat aattcacaca ggagagaaac cctacaagtg
     1441 taaagtatgt ggcaagggct tcgattatcg atcgagactt tacaaacaca agaaaattca
     1501 cactggagag aaaccataca aatgtgaaga atgtggaaaa gcctcctcta taaagtcata
     1561 cctatatcta cacaaacaca tacacacagg gggaaaatac tatatctgca aagaatatgg
     1621 caaagttttt gaggggaaaa aagtatttcg aaatcaccag ataattcatt taggaatgaa
     1681 gcccaacaag tatgaagaat gtggcaagtc cgtccgtttt tcatccctac tttctgaaca
     1741 caaaagaatt catgcaggag aaaaacccta caaatgtgaa gtatgtggca aggccttctg
     1801 cattccatta ttactttcta aacataaggt aattcatatg ggaaagaaac cctacaagtg
     1861 tgaaatatgt ggcaaggcct tcaaattgcc atcaaggctt tcaaaacatg agaaaattca
     1921 tatagaagag aagccatacc agtgtaaagt atgtggaaag gcctttcgct ctccatcatt
     1981 actttgtgaa catgagagaa ttcatacagg cgatttaccc tgcaagtgtg atatatgtgg
     2041 caaggccttc cgttatccat cattactttc aaaacacaag gtagttcata cagaagataa
     2101 accctacaag tgtcaagtat gtggaaattt cctccgctct caatcatccc ttcatgaaca
     2161 caagagaatg catatgggag agaaacccta caagtgtgaa atatgtggca aggcctttga
     2221 atatccatca agagttttaa aacataagaa tgttcattca gaagagaaac catacaagtg
     2281 taaattatgt ggaaagacct tccgctctcc atcagcattt cgtgtacaca agagaaagca
     2341 tccaggagaa aaaccataaa actgtgaagt atgtggcaag gccttccatt atccaacaat
     2401 actttccaat aagaaaatcc atacaaggga gaaaccatac aagtatgaag attgtggcaa
     2461 agctttaaac tatccatcca tactttctaa acacaaaata attcatacag aagagaatcc
     2521 ctacaaatgt gaagtatgtc gcaaggtctt caattatcca tcaagacttt acaaacaaaa
     2581 cagaattcat acatgggaaa aaccttacaa aaaccttaca aatatgaagt atgtggcctg
     2641 gccttctatt gtccatactt tctgaaaaga agagaattta tacaggtgag aaaccctaaa
     2701 cttgtgatgt atcagtcaag tccttcagaa cttcccagat tctttctcct catttgataa
     2761 ttcattctag agagaaacca tacaaaagtg agaaatgtgg aaaagcctcc tctacaaagt
     2821 catacctata tctacaaaaa ttagctcaca atgaagagaa tatttacaaa tcaaaagaac
     2881 ctggcaaaat ggccaacaaa tttagggatg atcaaagaat tcattctgga aagaaatcat
     2941 acaaacgtgg caaaaacttt tgaagttcca ttgcatggta tgaacacagg ataattccta
     3001 ttggagataa acaccacaca tgtgaagaat gtgacaaaca ctattatcag tcttctggtc
     3061 ttaagcgaca tcaaagaatc catctgtgag agacaccaca caagtgtgaa ggtgccaagg
     3121 tcttttggaa ttagtgtaaa cttgaggaaa acataattca tactagactg aaatgtcaca
     3181 agtgtgaaaa tgttacaaac ccttaaataa gctttcttat attttttaac acaaggtagt
     3241 tcaaactgga gtgaaatagt ataaatgtta aaatgttcat aaaatcctaa tacttctcca
     3301 gaccctaaaa gttatctttg ttttagaatt gaaaccctta ttctatacca gtatgtagaa
     3361 aagtaatcac ttgtttttat gttgtaggaa ctcatggtta agaaattgcc ttgagtctca
     3421 catgacatat ggactgtagt atttcaaagt gttataactg ttaaatcctt tatgaacctt
     3481 tcaagttgta gcctatttta cttatgaagt aaaggtaagg ttggggaaaa tgttatcatt
     3541 taaagctttg tggatagagc tagcatgttg atttgggaac aaacttaatt gccaacaaga
     3601 cccatagccg tgttaatatt cccagtaccc acaaaataaa agaggtaatt atctctgaag
     3661 tttgtcctct gacctctatg cattggtctc cacacaaaca aaaatttgtg tacctagcaa
     3721 taaataaact ttaactatgc ttttgaaa
//
