LOCUS       XM_039103405            4072 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus Mir9-2 host gene (Mir9-2hg),
            transcript variant X1, mRNA.
ACCESSION   XM_039103405
VERSION     XM_039103405.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086020) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4072
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..4072
                     /gene="Mir9-2hg"
                     /note="Mir9-2 host gene; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 1 EST, 35 long SRA reads"
                     /db_xref="GeneID:120100659"
                     /db_xref="RGD:40960165"
     CDS             637..1080
                     /gene="Mir9-2hg"
                     /codon_start=1
                     /product="uncharacterized protein Mir9-2hg isoform X1"
                     /protein_id="XP_038959333.1"
                     /db_xref="GeneID:120100659"
                     /db_xref="RGD:40960165"
                     /translation="MDAESVHQERWHTAVGLKWEEIYVNIYTQKPLGRAEACLEYLCR
                     RLKEPVCVLWPRSAVTGSCLLPGSSISVRLNLGTTLLGADRSNETSKKHILNKLFNQP
                     KAGAAVRQQDASSPRLEVLRNRGSLLKHSYTRYVQSSFQHLVQSS"
     polyA_site      4072
                     /gene="Mir9-2hg"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tgtgcacacc agcgatggtg actccaaaga gggagattag aaacagaaac gattacagag
       61 agatcagaga taagaggtgt acctctctct gtcccttgtc acacagcgcg cgtgcacatg
      121 catttgtaca aacatgcatg ctcatacagc aatacggtcc acattctttg ctacttccct
      181 ctaaatacat gcactgacac tctatgcact gcaaggtggt cagtgtgttt gtcctgagcc
      241 tgcataaaag cgggcaggta catgccagag cccaggcaag aataaacagc cacgcacaat
      301 tgaattgcag ccaaactcag gcattcagcc tgctcaactg attcattcgg ccaggtttcc
      361 ccgaccccag ccggaattct gtaaccagtt gaggaattct gcaattattc ataaaatgtg
      421 ccgaaatttc acctcaagaa acgtaatctt gctatatatg gcaaggtaag ggtgaagctg
      481 aagggtggat gtgtttccat tttttaatgt tttacgcaga gccatctgac cactttttat
      541 tgggtgacat atcatatgag cactttcgtg taggcttgga aaaactatag ccagaggtaa
      601 ggctagaaaa tgccataaga attaagggtg ctgaaaatgg atgctgagag tgtccatcaa
      661 gaaagatggc atacagctgt aggtttgaaa tgggaggaga tatatgtgaa tatttataca
      721 caaaagccac tggggagggc tgaggcttgc cttgagtatc tgtgcagacg cctaaaggag
      781 cctgtttgtg tgctgtggcc acgttctgct gtgactggat cttgtcttct gcctgggtcc
      841 tcgatttccg tccggctgaa tttggggaca acactgcttg gcgcagacag atcaaatgag
      901 acttcaaaga agcatatcct gaacaagcta ttcaatcaac caaaggccgg ggcagcagta
      961 cgccagcaag acgcatcttc tccccgccta gaagtcctga gaaatcgagg atctctccta
     1021 aaacattcat atacaagata tgtgcaatca agcttccagc acttggtaca aagctcatga
     1081 tgcctaaccc agtgatccgg agcagatctt tgaatcagct gtcacttcta tagaatggga
     1141 ttttcccctt cttcctcttt aaccagcgtt ggaaactgcc tatggcttta cacatctcag
     1201 tagaggaagg ctaaagaatc ttacgtgaga atgaagcaat ttacaatgca aatagaggcc
     1261 tgtgaagagc tggacgctgc tgctctaccc ccaacagctt gctgcacctt agtcgctggt
     1321 cttattttcc gatactaata gatgaattgt tggctaacga tgctggagat tacttgctgg
     1381 aaggggaaag aaaaagtttg gaataaattc tgaatgcaac agatctcatt tggatgttct
     1441 agacgcatac acccagacag aaaccaggtc atgtttacat gaaaggagaa tcttaaacgc
     1501 ggcgaatatc cttccctgag gactatgctt cccccaaacc aacgaggatc cggatctgga
     1561 gtccagccag aggaagacag ccttgtgagg gaagcgagtt gttatctttg gttatctagc
     1621 tgtatgagtg tattggtctt cataaagcta gataaccgaa agtaaaaact ccttcaagat
     1681 caccgaggag tgctccggaa agaaagacta cagtcaagag acagtaaaaa ccagaaaggt
     1741 caggaatgct tattgaatct aacttttttt ttcttatggt tgaaagtggg atgcaaggaa
     1801 acttaagtga cacatatact gaaatcctaa ggggccaggt tttgaggggg ttgtacaact
     1861 ggagaggaga attgtgtagt atttttatgg gcgaagatgc atgtattttc tatattgttc
     1921 tattttgaag caaacgttta cttatgggat tttttttctt agaaagctgt tatagcgatg
     1981 cctggtacct cgttttaaaa aatgatttca taattatgta gattgggcag ttcccatctg
     2041 aggctcctcc cccaagtttg aagcttgtgc ctggaaactt tctatgtatt tggtgtgtac
     2101 atcaaattct gtgaagttag actttcagaa agcttatact gggaggttaa taatttatct
     2161 ctaccgagga cttagagcta gaagggaaaa ggggtggggg caaaggctga tttttattct
     2221 tctattcaaa atacaaggac agatgcttct ctgttccaag agggtttcct tgaggaagct
     2281 actgaagcag aaagacatga tggagacgag atcgcctccc ctcttgtcaa agtgttaaaa
     2341 aaatgttctg tcttactctg cgcctagcat tggaaatgaa agtgacattt acgccacaac
     2401 ccacgtgtgc gcctcctctc tttttgttta aggatgatca ggtctatcca ggaaacagct
     2461 ctggcatccc aaactgaaat aattaggacg tatatagacc tgacaaaaat ggaagggggt
     2521 ggggaatctg agggtctgtc ttgcctaatt gattccgcta aacggaaagc aggagatgtg
     2581 aacggcagga cgctccgatt cccacgctcg ggggcaagtg gtaaagcctg gccggcagcc
     2641 tatgacagac agccctgttg gggggtaggg ggatgaaaaa aacatcaagc gcacacacac
     2701 catactcatc tccatcctta agaaagtaaa ggcatttccc acccacagcc atctgcagcc
     2761 ttccaaatgg caacaccaac tggttggtga ctgctacgcg tactgtctct gttatttttt
     2821 tttaaacctc tgtttaatct ggccatgatt aaatttggtt ttctcctttg gttgaaattt
     2881 tcattattta aggaaagcaa gtgccaagac catcccagga ctgcatgccc tcctcagaga
     2941 agtcctcggt atgtggttag ggcctgtgac cacctttggc ttttgttttg gctgtgttat
     3001 atttaaaagt cacatctcat agccctcctt actatgactt acttcattgg gttgtttact
     3061 tccttgtgtg acacacaagg acttgaccta ctgatgctga tctacattct gaaaataaag
     3121 ctggaaaggc atcagcctat agaaagttgg ttgcaaccac agtatgttaa agaacttgtt
     3181 ttaaaatagt cctagcagaa tgtgcttttt ttcttttctt cctcctcctc ctcctcctct
     3241 ccctcctcct cctcctccct cttcacctaa aagtaactag tcccagcata aactttgagg
     3301 ttttgaggaa ccatggtagt ccttttttga aattccttat attctgttac attttatcag
     3361 gcaaacattt gtataggcat ttgcacataa atataaggat ggcaatgaaa aaaaaatccc
     3421 caaactgcct gttatcttcc acatggccta aattactgag actcccaaat gcatactttt
     3481 tcttcaggga cagtacattt ttctttacag cttcaacctc ttacagggtt gagactagag
     3541 gaaccagtaa agccactggt actcccattt agaaaagcca agagacttta ataacgtaaa
     3601 ttctcaattt ggctgctgaa catgtgccaa agttttacgg ctgtagtgac tgtcgagaag
     3661 acccttgttt atttaccttt aaagcactgt ttgtgcaaac aagccttcat tgttaagtgc
     3721 ctgtattcct ttcatttgct tcttgtccag gggtgctatt tacctagaac cattgtctac
     3781 tacaattaac atttacatta caaagtgtgt gcttttcctt ctcaaggagg ttcaattaag
     3841 gcaataagat gtttgctggg gaaacctatt gtttactcaa agcactcaat ggggtcaaat
     3901 tactgaagtt tttgcctaca tcttgggttg tttatgtaaa tatgttaact ataacatcta
     3961 aggaaaataa acaatattaa aattatgtgt tcgccattgt catatccaac ttgctttgta
     4021 tcatactaat gttacataac ttatcgatca ataaaaatac atttcaatgt ta
//
