LOCUS       XM_039103365            5136 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus vomeronasal 2, receptor 82 like
            (Vmn2r82l), mRNA.
ACCESSION   XM_039103365
VERSION     XM_039103365.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086020) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 4% of CDS bases
            frameshifts          :: corrected 3 indels
            internal stop codons :: corrected 3 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-126               JAXUCZ010000002.1  3200043-3200168
            127-127             "N"                1-1
            128-1260            JAXUCZ010000002.1  3200169-3201301
            1261-3231           JAXUCZ010000002.1  3201304-3203274
            3232-5136           JAXUCZ010000002.1  3203276-3205180
FEATURES             Location/Qualifiers
     source          1..5136
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..5136
                     /gene="Vmn2r82l"
                     /note="vomeronasal 2, receptor 82 like; The sequence of
                     the model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 1 base in 1 codon; deleted 3 bases in 2 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein"
                     /db_xref="GeneID:120100635"
                     /db_xref="RGD:41083049"
     CDS             1..5136
                     /gene="Vmn2r82l"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 3 bases in 2 codons; substituted 3 bases at 3
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:1543..1545,aa:OTHER)
                     /transl_except=(pos:2722..2724,aa:OTHER)
                     /transl_except=(pos:3190..3192,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: uncharacterized protein
                     Vmn2r82l"
                     /protein_id="XP_038959293.1"
                     /db_xref="GeneID:120100635"
                     /db_xref="RGD:41083049"
                     /translation="MGQPMSTPLSQTLNHWSEVKTRVQNLSLTVKKGRWQTYCSSEXP
                     TFGVGWPPEGTLDQAIISSVRRIVFHPGPRSHPDQVSYIVVWENLASNPPLWLRSWSR
                     PPPSSSSHILVAQESRTEKKVIPRIYPDIESPLEEDEPTPSAPNAPPPYRHDIDRSEG
                     PAAGTRSRRGASSEGPPLVPTFPLRAYGPPVDPPDLQPLQYWPFSSADLYNWKTNHDS
                     FSENPSSLTNLIESLMFSHQPTWDDCQQILQVLFTTEEKEQILLEARKHVPGPDGTPT
                     PMPNLIDAAFPLDRPPWDYNTAEGRERLSTYRRALVAGLKGAARRPTNLAKVREVLQG
                     PTEAPSLFLERLLEAYRRYTPFDPTSEGQQAAVAMSFIGQSYPDIKRKLQRLEGLQNF
                     TVRDLVKEAEKVYHKRETEEERRERERREREGREDERNRRRDQNLTRILAAVVPEGNR
                     SVGRKTGNLGNLRHRNDWSTPDWKRTGRDQCRLCRRKGHWARDCPNQKEKMRGPKTLA
                     LRNEDDXGSWGSYCLPEPRVTLDVEGTPVDFLVDTGAQFSVLQHPMGKLTNKTSIVVG
                     ATGTKIHKWTTARRINRGAGRVSHSFLVIPECPTPLLRRDLLTKMNAEIQFSLSGLQV
                     KWHPPPQAGMDLTFKLADEYRIHEKGNKMDNPQWWLSRFPEAWAETGGVGMASQVPPI
                     VIIVKSGATPISVRQYPMSKGAREGIRPHIKKFLQLGILTPCRSPWSTPLLPVKKPGT
                     QDYRPVQDLKEVNKRVEDVHPIVPNPYTLLSTLPPERIWYTVLDLKDAFFSLRLHPNS
                     QHLFAFQWKDPETGHSGQLTWTRLPQGFKNSPTLFDEALHRDLTIFRTNNPHLTLLQY
                     VDDLLLSAETQGECQKGTEQLLAELGRLGYRASAKKAQLCHTEVTYLGYILXDGKRWL
                     TEARKKTVLQIPTPQTPRQVREFLGTAGFCRLWIPGFAALAAPLHSLTRSETEFQWKP
                     EHQAAFDAIKQALLTAPALVLPDLTKPFTLFVGEKVGVAKGVLTQTLGPWKRPVAYLS
                     KKLDPVASGWPSCLKIIAVVATLVKDSDKLTLGXPVTIIAPHALESVIRQPPDRWITN
                     ARLTHYQSLLLNDRVLFGAPVILNPATLLPKATEQKPIHVCADILAEASGVREDLTDV
                     PLPGCPSWYTDGSSFLVEGKRRAGAAVVDGKKTIWSSGLPEGTSAQKAELIALTQALR
                     LAEGKNINIYTDSRYAFATAHVHGAIYRQRGLLTSTGKEVKNKDEILSLLEAVHLPRK
                     VAIIHCPGHQRGQDAVAKGNRMADATAKQAALGAVILPVVGKELRPNLRDSSFQYSPE
                     ELEEFHHSDWIRGFSPYGVAETTDGKQVLPNQQGREFIANLHRLTHLGTRKLIELMKS
                     SEYHIQRLPDIVQEVVQSCQACALVNSNRPPSLHGKRLRGDRPGAHWEIDFTEITPAR
                     YGNKYLLVFVDTFSGWVEAFPSRSETARVVAKKILEEIFPQFGLPKVIGSDNGPAFVA
                     QVSQGLASQLGINWKLHCAYRPQSSGQVERMNRTLKETLTKLALETGGKDWTALLPFS
                     VFRARNTPGRFKLTPYEILWGSSPPIGEVGGVHDPDPPLSQPLLTRLRALEIVRQQVW
                     DSLKETYRTESPEIPHGFQVGDLVLVRRHRAGNLEPRWKGPYSVLLTTPTAIKVDGIA
                     AWIHALHAKRAPKTPEDEWTVERTPHPLKLCLRRRLVPGGDIE"
ORIGIN      
        1 atgggacagc ccatgtccac tccattgagt caaacgttga atcactggtc agaggttaag
       61 acaagagtcc agaatttgtc tttgacagtg aagaagggac ggtggcaaac ttactgctcc
      121 tctgagntgc cgacattcgg agtgggctgg ccgccagagg gcaccctaga ccaggcaatt
      181 atttcatctg ttagaagaat tgtttttcat ccggggccca gatctcatcc agaccaggtc
      241 tcttatatcg tagtatggga gaatctggcc tctaatcctc ccttgtggct gaggtcctgg
      301 tcccggccac ccccttcttc atcctcccac atactggtag cacaggagtc ccggacggag
      361 aagaaggtga tccctagaat ttaccctgac atcgagagtc cccttgaaga ggatgagccc
      421 acaccgtcgg cgcccaatgc accaccccct tatcgacatg acattgatag atcggaaggc
      481 cctgccgctg gaaccagaag ccgccgaggg gccagctcag agggaccccc ccttgtcccc
      541 accttcccgc tccgagctta tggcccccct gtcgatcccc ctgacctaca acccttgcag
      601 tattggcctt tttcttctgc agatctttat aactggaaaa ctaaccatga ttccttctct
      661 gagaatcctt ctagtttaac taacctcata gagtctctga tgttctccca tcagcccacg
      721 tgggacgact gtcaacagat tttacaggtt cttttcacca ctgaggagaa ggagcagatc
      781 ctccttgaag ctcggaaaca tgtcccaggg ccagatggga cccctacccc gatgcccaac
      841 ctcattgatg ctgcctttcc cctcgaccgc cccccttggg actacaacac agctgaaggt
      901 agggagcggc tgtccacata ccgccgggct ctggtggcag gtctcaaggg ggcagctcgt
      961 cgccccacca atttggccaa ggtaagagag gtgctccagg gacccacaga ggccccctct
     1021 ttgtttttag agagacttct agaggcgtac cggagataca ccccctttga ccctacgtca
     1081 gagggacaac aggcagcagt agctatgtcc tttataggtc agtcctaccc agacatcaag
     1141 cgtaagttgc agagattgga aggcttacaa aactttacag taagagactt agttaaggag
     1201 gcagagaaag tgtaccataa gagagagacg gaggaagaga ggagagagag agagagaaga
     1261 gaaagggaag ggagagaaga tgagagaaat agacgtagag accagaactt gactcgtata
     1321 ctggccgcag tagtacctga agggaacaga agtgtaggaa ggaagacagg gaacctgggc
     1381 aacctacgcc atcgaaatga ctggagcaca ccggactgga aaagaacggg cagagaccaa
     1441 tgtcgcctct gcaggaggaa aggacattgg gccagggact gcccaaacca gaaggaaaag
     1501 atgcggggtc ctaagaccct ggccctaagg aatgaagatg actagggcag ttggggctcg
     1561 tattgcctcc ccgagcctag ggtaacttta gatgtggagg gaacccccgt ggattttctg
     1621 gttgatacag gggcacagtt ctcagttcta caacatccca tggggaaact cacaaacaag
     1681 actagtatag tagtgggggc aaccggcacg aaaatacaca aatggacaac agcccgccgc
     1741 attaaccgag gggccggtcg agtatcacat tcttttctag taattcctga atgccccacc
     1801 cccttgctca gaagagatct gttgaccaag atgaatgccg aaatccagtt ctctttaagc
     1861 ggactgcaag tgaagtggca cccccccccc caggccggta tggacttaac ctttaaacta
     1921 gctgacgaat atcgcataca tgagaaaggt aacaaaatgg acaacccaca atggtggctt
     1981 tcaaggttcc ctgaagcctg ggcagagaca gggggggttg ggatggcctc ccaagtacct
     2041 cccatagtaa tcatagtcaa gtcgggtgcc acccctatca gcgtacgcca gtatcctatg
     2101 agcaaggggg caagagaggg catccggccc cacataaaga agtttttaca gctgggcatc
     2161 ttaaccccat gccggtcccc ctggagcacc ccactactcc cggtaaaaaa gccgggaaca
     2221 caagattacc gacccgtcca ggacctgaag gaagttaata aacgggtaga agatgtacac
     2281 cccatagtgc ctaatcctta caccctcctc agcactctgc caccagaaag gatatggtat
     2341 actgtcttgg atctcaaaga tgctttcttt agcctgagat tacatcccaa cagccaacac
     2401 ctgtttgcct tccaatggaa ggatccggag acgggacatt ctggacaatt gacctggacc
     2461 agactgccac agggattcaa gaattcacct accctcttcg atgaggccct acatcgggac
     2521 ctgacgatat tcaggaccaa taacccacat ctgactctcc ttcaatacgt tgatgatcta
     2581 cttctgagtg ctgaaaccca aggtgagtgc caaaaaggaa ctgaacaatt actagctgaa
     2641 ttaggccgtt tgggataccg ggcgtcagca aagaaggcac agttgtgtca taccgaagtg
     2701 acctacctgg gctacatcct ctgagatgga aagcggtggc tcaccgaggc ccggaagaag
     2761 actgtgctcc agataccaac acctcaaacg cctcgacagg tgagagaatt cctaggcact
     2821 gccgggttct gccgactatg gattcctggg ttcgctgctc tggctgcccc actccactct
     2881 ttgaccaggt cagagactga gttccaatgg aagcctgagc accaagcggc ttttgatgcc
     2941 atcaaacagg ctttattgac cgcacccgct ctggtcctac cggacttaac caaacccttt
     3001 acgttgtttg tgggcgagaa ggtgggggtg gcgaagggag tgttgaccca gaccttgggc
     3061 ccctggaagc ggcccgtggc atacctctct aagaaactgg acccagtggc tagtggctgg
     3121 ccgtcctgcc ttaagatcat cgcggtagta gccacgttgg tgaaagactc tgataaacta
     3181 acattaggct agccagtgac gatcatagcc ccacacgcct tagagagcgt tatcagacag
     3241 ccccctgaca ggtggataac caatgcccgc ctgactcact accagagcct cctattaaat
     3301 gatagggtct tgtttggggc ccccgtcatt ctgaacccag ccacattgct tcctaaggca
     3361 acagagcaga aaccaataca cgtgtgtgct gacatcctgg ctgaggcctc tggtgtcagg
     3421 gaggatttga ctgatgttcc cctgccaggc tgcccttctt ggtacacaga tggcagcagt
     3481 tttctggtgg aaggaaaaag aagggctgga gcggcagtgg tagatgggaa aaagactatt
     3541 tggtccagtg gactaccgga aggcacctca gcccagaagg cagagttaat agccctcact
     3601 caggcattga gactggctga aggaaaaaat attaacatct atactgacag ccgctacgcc
     3661 tttgccactg ctcatgtaca cggggccatc taccggcaga gaggactctt gacgtccaca
     3721 ggaaaagagg tcaaaaataa agatgagatc ctcagcctcc tagaggctgt acacctccca
     3781 agaaaggtgg ccatcattca ctgtcccggg caccagaggg gacaggatgc tgtggcaaag
     3841 ggcaaccgta tggcagatgc cactgccaaa caggctgcac tcggggctgt gatcctgccg
     3901 gtagtaggta aagagctccg cccaaacctg agagactcca gttttcaata ttccccagaa
     3961 gaattagaag agtttcacca ttcagactgg atccgaggct tctctcccta tggtgtggcg
     4021 gagacaacag acggtaaaca agttcttcca aaccagcaag gacgtgagtt cattgctaat
     4081 ctccatcgtc tgacccactt aggtacgaga aaactgatag aactcatgaa gtcctctgaa
     4141 taccacatcc agagactgcc agacatagtc caagaagttg tacagagttg tcaagcatgt
     4201 gcccttgtca actccaatag acccccgtct ctccatggca aaaggctcag gggagatagg
     4261 ccgggggctc attgggaaat tgactttaca gaaataactc cagccagata tggtaataaa
     4321 tatctattag tgtttgtaga caccttctca ggctgggtgg aagcattccc ttcccgctca
     4381 gaaacagctc gagtggtagc taagaagata ttggaagaga tctttccaca gtttggactc
     4441 cccaaggtaa tcgggtctga caacggacct gcttttgttg cacaggtaag tcaggggctg
     4501 gccagtcaac tggggattaa ttggaaatta cattgtgctt atagacccca gagctcagga
     4561 caggtagaaa gaatgaatag gaccctaaaa gagaccttaa ctaaattggc cttggagacc
     4621 ggcgggaaag attggacagc cctccttccc ttctccgtgt tccgtgctcg gaacactcct
     4681 gggaggttta agctgacacc gtatgaaatc ctatggggca gctcgccccc tataggtgaa
     4741 gttgggggag tacacgaccc ggacccccct ctttctcaac ccctcctcac ccgcctcagg
     4801 gctcttgaga ttgtcaggca gcaggtgtgg gattcgctga aggagaccta ccggacggag
     4861 agccccgaga tcccccacgg attccaggtt ggagatctgg ttctggtcag acgtcatcga
     4921 gccggcaacc ttgaacctcg ctggaaagga ccctactcgg ttctactcac caccccaacc
     4981 gctataaagg ttgatggaat agccgcctgg atccacgcat tgcacgccaa aagagctccc
     5041 aagactcctg aagatgaatg gactgtggaa aggactcctc accctcttaa gctttgcctt
     5101 cgccgccgtc tcgtcccggg tggggacatc gaataa
//
