LOCUS       XM_039101054            1315 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protein shisa-like-1a (LOC120099871),
            mRNA.
ACCESSION   XM_039101054
VERSION     XM_039101054.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101054.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1315
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1315
                     /gene="LOC120099871"
                     /note="protein shisa-like-1a; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 7 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:120099871"
                     /db_xref="RGD:41042766"
     CDS             794..1285
                     /gene="LOC120099871"
                     /codon_start=1
                     /product="protein shisa-like-1a"
                     /protein_id="XP_038956982.1"
                     /db_xref="GeneID:120099871"
                     /db_xref="RGD:41042766"
                     /translation="MGLQRNPGLLLTGLCVGLLFSWMNLAQPTDLSALAHHPHLCQTT
                     RDAEGRHYPGFFCPRLSDTPEEAYCCHLQAAGGSCCTLDEFEALYQVNLSTLQPPPIL
                     RGPGPLLALGIYSLLLMALMTADFVHFCRGPGRRERQNSRGRRLSFRASAARPLQVPV
                     GTD"
ORIGIN      
        1 aaccataagg gagcctgctt cagtctccag acctctgctt tgggcccctg aggtaatgag
       61 tcttgtcccc gctgtttcag gaacataatg tcacctagct ttggtaagca ctggaataat
      121 ccttcactct ttattggccg ccaagctttg gatcttctgg agaaatcccg tcttagtgtc
      181 agcagctctg aagtatgagg gataagcaag atgttggagt ctccctgacg ggttctgaga
      241 aatggagata gctagctagc tgctaagggt attccaacca ggcaggtagc ttttgtgtct
      301 gtgctggtgg ctggggagat aaggctcagg ggaagcttca tgacaggact ctccagcagg
      361 cttggtggtt gccatgtcac agaggttccg gagggatgcc ccacaggccg aacagaggtt
      421 tctagggatt aaaatggaat agccagtatt cccgaggcgt ccatagcagc ctagaagttg
      481 agggatgggt agacagaaac acatttggct ttacgtgttc gtttcttttc tttctccctt
      541 ggcattcctt tcctcctttc tgcttaggaa atttggagcc agtttgtagg cagtttggag
      601 ccaaaggcct cacatttccc agctgatgat aggccctaat cactctcatc ttcctacaag
      661 cctgtaacag aggagtttcc acttctggga atcttggtac tttaatgtca ggttccttac
      721 tgtctgtagc caaggcttag aacccatact ggattcccat actggactac aactgaggtg
      781 gaggtgactt ctcatgggcc tccagaggaa tccagggctt ctgctgacag gcctgtgtgt
      841 gggactgctt ttcagttgga tgaacctcgc tcagccaacc gacctctcag cactggctca
      901 ccacccccat ttgtgtcaga ctacacggga tgccgaaggc cgccactacc ctggtttttt
      961 ctgtcctcgc ctctctgata ctcccgagga agcctactgt tgccacctgc aggctgctgg
     1021 gggttcctgc tgtaccctgg atgaatttga ggccctgtac caagtaaact tgtctactct
     1081 tcagccccca cccatcctca gaggcccagg cccgctctta gcactgggca tctacagtct
     1141 actgttgatg gcattgatga ctgcagattt cgtgcacttc tgccgtggtc cgggacggag
     1201 agaaaggcaa aactcccgcg gccgccgcct ttcctttcgg gcctctgccg cgcgccccct
     1261 acaggtccca gtgggaacag actaagacgc tcgggaagca tccttgaccg tgcgc
//
