LOCUS       XM_039101019            5119 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC120099849
            (LOC120099849), mRNA.
ACCESSION   XM_039101019
VERSION     XM_039101019.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101019.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5119
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5119
                     /gene="LOC120099849"
                     /note="uncharacterized LOC120099849; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 31 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:120099849"
                     /db_xref="RGD:41347657"
     CDS             138..4976
                     /gene="LOC120099849"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:1683..1685,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: uncharacterized protein
                     LOC120099849"
                     /protein_id="XP_038956947.1"
                     /db_xref="GeneID:120099849"
                     /db_xref="RGD:41347657"
                     /translation="MGQKVTTPLTLTLDHWTEVRTRAHNFSVDVKKGPWQTFCSSEWP
                     DFKVGWPPEGAFNLSLVLAVKRIIFQEIGGHPDQIPYIIVWQDLVQNPPPWVKPWTMG
                     SGVTVAVAAAKPKQTQPSAGPSAPPKIYPEIEDPLWTEPQPPPYPLPRPSAPPVPAPV
                     ERDGVEGPAAGTRSRRGRSPEGDFTVALPLRAYVGGPPPGPDELVPLQYWPFSSADLY
                     NWKTNHPSFSENPSGLTGLLESLMFSHQPTWDDCQQLLQALFTTEEKERILLEARKNV
                     PGPDGTPTNLPNLIDETFPLTRPAWDFNTAEGRERLTVYRRTLVAGLKGAARRPTNLA
                     KVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSSEGQQAAVAMAFIGQSASDIKRKLQ
                     RLEGLQDYTLRDLVKEAEKVYHKRETEEEKQEREKKEAEERENRRDRRQERNLTKILA
                     AVVGDKRIEKGQSGYLGNGARRPPGGKRLQLENDQCAYCKEKGHWARNCPKKKQRGPK
                     VLAFEENXGSRGSTPLPEPRVTLSVEGTPVDFLVDTGAEHSVLTKPLGQLGQKKTMVM
                     GATGSKLYPWTTKRVLDIGKSQVTHSFLVIPECPTPLLGRDLLTKLKAQVQFTSKGPK
                     VTWEEAPVACLVLSLEEEYRLHEQNPKQLLAPEWLSAFSEVWAEQTGMGLAKQVPPVV
                     VELKADASPVSVKQYPMSREAKEGIRPHIQRLLQLGILVPCQSPWNTPLLPVRKPGTN
                     DYRPVQDLREVNKRVQDIHPTVPNPYNLLSSLPPERTWYTVLDLKDAFFCLRLHPNSQ
                     PLFAFEWRDPEGGHTGQLTWTRLPQGFKNSPTLFDEALHRDLAPFRAQNPQISLLQYV
                     DDLLLAASTQELCREGTKRLLNELGELGYRVSAKKAQLCRTEVTYLGYTLREGKRWLT
                     EARKKTVMQIPTPTTPRQVREFLGTAGFCRLWIPGFATLAAPLYLLTKEKVPFTWTEE
                     HQRAFEDIKAALLAAPALALPDLTKPFTLYVDERAGVARGVLTQALGPWKRPVAYLSK
                     KLDPVASGWPSCLKAIAAVALLVKDADKLTLGQHVTVIAPHALESIVRQPPDRWMTNA
                     RMTHYQSLLLNERVTFAPPAILNPATLLPEIHNSTPIHQCVDILAEETGTRKDLTDRP
                     WPGVPAWYTDGSSFVVEGKRRAGAAVVDGKQVIWASSLPEGTSAQKAELVALTQALRL
                     AEGKAINIYTDSRYAFATAHIHGAIYKQRGLLTSAGRDIKNKEEILALLEAVHLPKKV
                     AIIHCPGHQKGEDPITKGNQMADLVAKQVAQQVTILAEKSQTPVKTPVTDDSNYIYSA
                     NDFKILENMVYRKQAQEFSFDGVARTMDGRVILPTKEGISYVQRLHQLTQLGADKLKQ
                     LVKASKYHVLNLNSTIRQVVDSCQACTLTNAAKPYQEPGKRRRGDRPGVHWEVDFTEI
                     KPGKYGNKYLLVFVDTFSGWVEAFPTKSETAQVVAKKILEEILPRFGVPKALEVIRTQ
                     IWDQIKEAYAPGTSEVPHRFQVGDLVLVRRHRAGTLEPRWKGPYLVLLTTPTAVKVDG
                     IAAWIHASHVKKTPSQNEDNNWMVATTNNPLKLRLCRRGKEPGCRNMARTHRSCESSD
                     AS"
ORIGIN      
        1 accggtttgt taggcaaggt ctgcaacctg ccgatcagtt tcagtgcctc tggtcgacac
       61 gaagtcgacg tcggttttgt tttctttttt ctcttttgtt tgtgctcgtg tgtgtggtgt
      121 gtgttgtcga gctcgacatg ggacagaaag taacgactcc tttgactttg actctggatc
      181 actggactga agtaaggact agagctcaca atttttcagt agacgttaag aagggaccct
      241 ggcagacttt ttgttcatcc gaatggccgg actttaaggt aggatggcca ccagagggag
      301 cctttaacct gtctcttgtt ctcgctgtta agcgcattat ctttcaggaa ataggaggac
      361 atcccgacca gatcccctat atcatcgtct ggcaggacct ggtccagaat cccccacctt
      421 gggttaagcc ctggaccatg gggtccggag tgacggtggc ggtagcggca gctaaaccta
      481 agcagaccca accatcggca ggcccttcgg cacctccgaa gatctacccc gagatcgagg
      541 accctttgtg gacagagcca cagcctcccc cttatcctct gcctcgacca tctgcacccc
      601 cggtcccggc acctgtcgag agggacgggg tggaggggcc tgcggcgggg acacggagcc
      661 ggagaggccg cagcccagaa ggggatttca ctgttgccct gcccctccgt gcctatgttg
      721 gtggcccccc gccaggcccc gatgaacttg tccctttgca gtactggcct ttctcttcag
      781 ctgatctata caactggaaa actaatcacc cttctttttc agaaaatccc tcgggcttga
      841 ctgggcttct tgagtccctt atgttttccc atcagcccac ttgggatgat tgccagcaac
      901 tcctgcaggc cctcttcacc acagaggaga aggagaggat cctgttggaa gccagaaaga
      961 atgtccccgg accagatggg acccccacta atctccccaa tcttatagat gaaaccttcc
     1021 ccttgacccg cccagcctgg gacttcaaca ctgcggaagg tagggagcgt ctcacagtat
     1081 accgccggac tctagtggcg gggctcaaag gggccgctcg gcgacccact aatttggcta
     1141 aggtaagaga agttcttcag ggaccagcag agccgccctc tgttttctta gagcgactga
     1201 tggaagccta taggagatat acaccgtttg acccctcctc ggagggacag caagcggctg
     1261 tagccatggc tttcattggg cagtctgcct cggacattaa aagaaagctg cagaggctag
     1321 aggggctcca ggactacact ttgcgagatc tagtaaaaga agcagagaag gtgtatcata
     1381 agagggaaac agaggaagag aaacaagaga gagaaaagaa agaggcagag gagagagaga
     1441 accggcgtga tcgccggcag gagaggaact taactaagat tttggccgca gtagtaggtg
     1501 acaaaaggat agagaaggga cagtcagggt acctgggcaa cggagcaaga agacctccgg
     1561 gaggaaaaag actgcagctc gaaaatgatc aatgtgcata ctgcaaagaa aaaggacatt
     1621 gggccagaaa ctgtcctaaa aagaaacaaa gaggacccaa ggtgctggcc tttgaagaga
     1681 actagggaag tcggggctcg actcccctcc ccgagcctag ggtaactctt tctgtggagg
     1741 ggactcctgt tgatttcttg gtagacacag gagcagaaca ttcagttttg accaagccac
     1801 tgggacaatt ggggcaaaag aagactatgg tgatgggagc cactggtagt aaactttacc
     1861 cctggaccac taaacgagtt ttagatatag ggaaaagcca agtgactcat tcttttcttg
     1921 tgattcctga atgccccacg cccctactgg gaagagactt attaaccaaa cttaaggctc
     1981 aagtacagtt cacctcaaaa gggccgaaag taacctggga agaggcccct gttgcatgtt
     2041 tggttttaag tttagaagaa gaataccgcc tccatgagca gaatcccaaa cagttactag
     2101 cccccgagtg gctgtctgct ttttccgaag tctgggcgga gcagacaggg atggggttag
     2161 ccaagcaagt accgccagta gtagtagaat taaaagccga tgcctctcca gtctcagtca
     2221 aacaataccc tatgagtagg gaagctaaag aaggcatccg gccacatatt cagagactgt
     2281 tacaactagg gattctagtg ccttgccaat ctccttggaa cactcctctc ctgcctgtac
     2341 gcaagcctgg gactaatgat tatcgaccag tacaggattt aagagaagtt aacaaaaggg
     2401 tgcaggacat ccaccctacg gttccaaatc cttacaattt actaagttcc ctaccaccag
     2461 agcggacttg gtacactgtc ttagacttaa aggatgcctt tttctgcctt cggttgcatc
     2521 ccaacagcca gccactattt gcttttgagt ggagagatcc agaaggagga cacactggcc
     2581 agctgacctg gacacggctg ccccaagggt tcaaaaattc ccctactctc tttgatgagg
     2641 cgctccatcg agaccttgcg cctttcaggg cacaaaaccc ccagatttct ctcttgcagt
     2701 acgtagacga cctactgctt gctgcttcaa cccaggaact gtgtcgtgag gggaccaaaa
     2761 ggctcctaaa tgaattgggt gagttggggt accgggtgtc tgctaaaaaa gctcagctgt
     2821 gtcgcactga ggtgacctac ctaggataca ctctccgaga aggaaagcgg tggctcaccg
     2881 aagctcgaaa gaaaactgtg atgcagatcc cgacccccac cactccgcga caagtacgtg
     2941 agtttctggg gacggcaggc ttttgtagac tctggatacc ggggttcgca acactggcag
     3001 cccctttgta ccttcttaca aaagaaaagg tcccattcac ctggaccgag gagcaccaaa
     3061 gagcctttga ggacataaaa gctgcactac tggcagcccc tgctctggcc ttgccagatt
     3121 tgactaagcc tttcacctta tatgttgatg aacgggctgg ggtagcccgc ggggtcttaa
     3181 ctcaggctct ggggccctgg aaacgcccgg tagcctactt gtcaaaaaag ttagacccgg
     3241 tcgccagcgg atggccctcc tgcctaaaag ccattgctgc cgtggcccta cttgttaaag
     3301 atgctgacaa gcttacccta ggtcagcatg tgactgtcat tgctccccat gctctggaga
     3361 gtatcgtgcg gcagcccccg gaccggtgga tgactaacgc ccggatgact cactatcaga
     3421 gcctgttact gaatgaacga gtgactttcg ccccacctgc cattcttaat cctgctactc
     3481 ttctccctga gatacataac tccaccccaa tacatcaatg tgtcgatatc ttggcggaag
     3541 aaaccggaac aagaaaggac ctgactgatc gaccatggcc aggtgtgcct gcttggtata
     3601 cagatggtag cagttttgtg gtggaaggaa aaaggagagc gggagcggca gtggtagatg
     3661 gaaaacaggt aatctgggca agtagtcttc cagaaggaac ttcagctcaa aaagccgaac
     3721 tcgtggcttt gactcaggcc ttgcgattgg cagaaggtaa ggccattaac atttataccg
     3781 acagccggta tgcctttgct acagcccata tacatggagc catctacaag caaagggggc
     3841 tactcacttc ggcgggaaga gacatcaaaa acaaagaaga gattttagcc cttttagagg
     3901 cagtacattt gccaaagaag gtggccatta ttcactgtcc aggtcaccaa aaaggagaag
     3961 atcctataac aaaagggaac caaatggcgg acctcgtggc aaaacaggtg gcccagcagg
     4021 taacaatatt agcagaaaag agtcagactc cagtaaaaac tccagttact gatgactcta
     4081 actacattta ttcagccaat gattttaaaa tattagaaaa tatggtttac agaaaacaag
     4141 ctcaagaatt cagctttgat ggggtagcgc ggactatgga tgggcgagtg atcctgccaa
     4201 caaaagaagg aataagttat gttcagagac tgcaccagtt gactcagtta ggggcagata
     4261 aactaaaaca acttgtcaaa gcttctaaat accatgtgtt aaatttaaat tcaacaatta
     4321 ggcaggtggt tgactcttgc caggcctgta cacttactaa cgccgctaag ccctatcaag
     4381 aacctggaaa aagaagacga ggagaccgac caggagtcca ctgggaagtg gattttactg
     4441 aaataaagcc aggaaaatat ggtaataaat atctattagt ctttgttgat accttttcag
     4501 gatgggtgga ggctttcccc acaaaatccg aaactgctca ggtggtggcc aagaagattc
     4561 ttgaagaaat cttaccccgg tttggggtac ccaaggctct ggaagtcatc agaacacaga
     4621 tctgggacca gataaaagaa gcctacgcac cgggaacttc agaggtgccc cacaggttcc
     4681 aggttggaga tttggtctta gtcagacgac atcgagctgg caccctagag cctcggtgga
     4741 aaggaccata tctggtgttg ctgaccaccc ccacggcagt aaaggtggat gggatcgctg
     4801 cttggataca cgcctcccac gtcaagaaga cacccagcca aaatgaagac aacaactgga
     4861 tggtggcaac tactaataat cctcttaagc ttcgcctgtg ccgcagaggt aaagagccag
     4921 gatgcaggaa tatggccagg acacatagga gctgcgaatc ctccgatgcc agctaagaaa
     4981 cccacgcccc cgaaacccat gcctccgaaa cccacgccat cgaaaccgga aatcatccag
     5041 accgctgccg ccgccaatgc caccaaagcc gccgctacta ctgccgtcgc tgctgctgct
     5101 gatgcaagcc gaggccccg
//
