LOCUS       XM_039100814            2123 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus signal recognition particle subunit
            SRP72-like (LOC120099767), mRNA.
ACCESSION   XM_039100814
VERSION     XM_039100814.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100814.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-36                JACYVU010000032.1  248597-248632       c
            37-2123             JACYVU010000032.1  246508-248594       c
FEATURES             Location/Qualifiers
     source          1..2123
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2123
                     /gene="LOC120099767"
                     /note="signal recognition particle subunit SRP72-like; The
                     sequence of the model RefSeq transcript was modified
                     relative to its source genomic sequence to represent the
                     inferred CDS: deleted 2 bases in 1 codon; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 14 Proteins, and 95% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:120099767"
                     /db_xref="RGD:41180804"
     CDS             1..2013
                     /gene="LOC120099767"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: signal recognition particle
                     subunit SRP72-like"
                     /protein_id="XP_038956742.1"
                     /db_xref="GeneID:120099767"
                     /db_xref="RGD:41180804"
                     /translation="MGSGSSGGVSVPALWSEVNGYGQNSDFSRALKTVNKILQINKDD
                     VTALHCKVVCLIQNGSFKEALNVINTHTKVLANNSLSFEKAYCQYRLNRIENALKTIE
                     SANQQTDKLKELYGQVVYRLERYDECLAVYRDLVRNSQYDYDEERKTNLSAVVAAQSN
                     WEKVVPENLGLQEGTHELCYNAACALIRQGQLTQAMKILQKAEDLCCRSFSEDSDGTE
                     EDPQTELAIIHDQMAYIMQLQGRIEEALQLYNQIIKLKPTDVALLAVIAYNIITINKD
                     QNVFDSKKKVKLTNAEGVEFKLSKRQLQAIEFNKALLAMYTNQAERCRKIASSLQSQS
                     PEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKISQGNISKA
                     CLILRSIEELKHKSGMVSALVTMYSHEEDFESAIEVFTQAIQWYQSHQSKSPAHLSLI
                     REAAKFKLKYERKKEAVSDLEQLWKQNSKDIHTLAQLISAYSLVDPEKAKALSKHLPS
                     SDSMSLKVDVEALENSPGATYIRKKGGKVTGDNQPKEQGQGDLTKKKKKKGKLPKNYD
                     PKVTPDPERRLPMRECSYYRGRKKGKKKDQIGKGTQGAIAGASSELDASKTVSSPPTS
                     PRPGSAATMASSTSNIVPPRYQKPAGAPATKMKQQQKKKKGGKSGW"
ORIGIN      
        1 atggggagcg gcagcagcgg tggggtgtca gtccctgcgc tgtggagtga ggtgaacggt
       61 tatgggcaga acagcgactt ctcgcgtgcc ctcaagaccg tcaacaaaat attgcagatc
      121 aacaaggatg atgtcacggc cttgcactgt aaagttgttt gccttatcca gaatggaagt
      181 ttcaaagaag ccttgaatgt catcaatact cacaccaaag tgttagccaa taactctctg
      241 tcctttgaga aggcatattg ccagtacagg ttgaacagaa tcgagaatgc cttgaagaca
      301 atagaaagtg ccaaccagca gacagacaaa ctgaaggagc tttatggaca agttgtgtac
      361 cgcctggaac gctacgatga gtgcctggca gtgtaccgag atcttgtccg caactcccag
      421 tatgactacg atgaggagag gaagacaaac ctgtcagcgg tcgttgccgc tcaaagcaac
      481 tgggaaaaag tggttcccga gaacttaggt ctccaagaag gcacacacga actctgttac
      541 aacgctgcgt gtgcactgat aaggcaaggc cagctgaccc aggcaatgaa aatcctacaa
      601 aaggctgaag atctttgttg ccgttcattt tcagaagatt cagatgggac tgaggaagac
      661 cctcagaccg agctggccat cattcacgat caaatggctt acatcatgca gcttcagggg
      721 cgcatcgagg aggctctgca gctttacaat cagataataa aactgaagcc aacagatgtg
      781 gcacttcttg ctgtaattgc atataatatc attaccatta ataaggacca aaatgtcttt
      841 gactccaaga agaaagtgaa attaaccaat gcagaaggag tggagtttaa gctctccaaa
      901 agacagcttc aagccataga gttcaacaag gctttgcttg ccatgtatac aaaccaggca
      961 gaacggtgcc gaaaaatagc ttctagcttg cagtcccaga gtcctgagca tctcctgcct
     1021 gtgctgatcc aagctgccca gctctgtcgt gaaaagcagc atacaaaggc aatagagctg
     1081 cttcaggaat tttctgatca acatccagaa aatgcagctg aaatcaagct taccatggct
     1141 caattgaaaa tttcccaagg taatatttcc aaagcgtgcc taatactgag aagcatagag
     1201 gaattaaagc ataagtcagg catggtatcc gcgttggtga ccatgtacag ccacgaggaa
     1261 gactttgaga gtgccattga agtcttcaca caggctatcc agtggtatca aagccatcag
     1321 tccaagtccc ctgctcattt gtccttgata agagaggctg caaagttcaa gctcaaatat
     1381 gaacggaaga aggaggcagt tagtgaccta gagcagctgt ggaaacaaaa ttcaaaagat
     1441 attcacacgc tagcccagct tatctctgct tactcgcttg tggatccaga gaaagcaaag
     1501 gctcttagta aacacctgcc ctcatcggat agtatgtctc taaaggtaga tgttgaggct
     1561 cttgagaatt ctcctggtgc tacatacatt cggaagaagg gtggaaaagt tactggagat
     1621 aatcaaccaa aggaacaagg acagggagat ttgacaaaga agaagaaaaa gaaaggaaaa
     1681 ctgcctaaga attatgaccc aaaagttacc ccagatccag aaagacggct accaatgcga
     1741 gagtgctctt actaccgagg aagaaagaag ggcaaaaaga aggaccagat cggaaaagga
     1801 acacagggag cgatcgcagg agcctcctct gagttggacg ccagtaaaac tgtgagcagc
     1861 ccacccacct ccccaagacc cggcagtgcg gcaacgatgg cctcctctac aagtaacatt
     1921 gtacccccaa gataccagaa acccgcaggg gccccagcaa cgaaaatgaa gcagcaacag
     1981 aagaagaaga aaggagggaa aagtggttgg tgatggcagt acacttgtca caggcagttc
     2041 ttaacccagt gtcagcgaca ttagggacat aataaaggtg acacagcaag aagcacagag
     2101 gtccctcctc catccccata gtc
//
